PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g08240.3.p
Common NameBRADI_3g08240, LOC100843667
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 347aa    MW: 37207.1 Da    PI: 9.0708
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g08240.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.71.3e-17177210134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Bradi3g08240.3.p 177 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 210
                       *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.75E-13169212No hitNo description
SMARTSM004012.0E-18171222IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-14175210IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.268175207IPR000679Zinc finger, GATA-type
CDDcd002021.33E-12176204No hitNo description
PROSITE patternPS003440177202IPR000679Zinc finger, GATA-type
PfamPF003202.5E-15177210IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MSTIYMSQLS TLPLMEGDQD QGHFQAFHLP KDPPILFPFM IDNPVEHQGQ GYGDQHLTQQ  60
FFGESSQQFN DHMMMAGGSD VFGTPSPFQP TIQSIGSDMI QRSSYNNPYD IKSKQAVSGL  120
TSEWASTTPP VKMRIVRKAA TSDPEGGAAR KPRRRAQANQ AEESQQQQHA MGVIRVCSDC  180
NTTKTPLWRS GPCGPKSLCN ACGIRQRKAR RAMAAAAVTA ANGRVTTAAS NGGAVAMVLG  240
TQASNAYQAA KPAKKEKRAA DVDRSLPFKK RCKMVDHAAI TITSESVASI AAPKEDQHHA  300
GEEGVAVAER PSKAGPPAAH FHGFPRDEIT DAAMLLMTLS CGLVRG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571121.10.0PREDICTED: putative GATA transcription factor 22
TrEMBLI1HYT10.0I1HYT1_BRADI; Uncharacterized protein
STRINGBRADI3G08240.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.11e-19GATA family protein