PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g05500.5.p
Common NameBRADI_3g05500, LOC100842553
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 358aa    MW: 38222.5 Da    PI: 8.4735
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g05500.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1071.1e-3349103155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl
  Bradi3g05500.5.p  49 KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 103
                       79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.80146106IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-3246104IPR009057Homeodomain-like
SuperFamilySSF466891.77E-1648104IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-2349104IPR006447Myb domain, plants
PfamPF002492.6E-851101IPR001005SANT/Myb domain
PfamPF143791.6E-25145191IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010088Biological Processphloem development
GO:0010089Biological Processxylem development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MFSSKKGGGS SGGGGAAVQV QGSNNSSVAA AAGMCVQGDS GLVLTTDPKP RLRWTVELHE  60
RFVDAVAQLG GPDKATPKTI MRVMGVKGLT LYHLKSHLQK FRLGKQPHKD FNDHAVKDAA  120
AAMEMHRNAA SSSGMMGRNM NDRNVHMNEA IRMQMEVQRR LHEQLEVQKH LQMRIEAQGK  180
YMQSILEKAY QSLGSGEPAA GYKSLGGVLD VCSIKDIGAA SMGFPSLQDL HLYGDLQQNQ  240
PIESFFACSD GGIGPPLGKM KRSSAGHYTA GGKSPMMWGS DDDGDQDKDD QLLQMAPPMM  300
MGEDMVDSIA AGVHEAAKPM MSHAMSGGGE SKLERPSPRR PHLGGGQRMG SPSVIYG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-1849105157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-1849105157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-1849105157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-1849105157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g05500.5.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519550.0JF951955.1 Aegilops tauschii clone TaMYB72 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570345.20.0myb family transcription factor APL isoform X1
SwissprotQ9SAK55e-93APL_ARATH; Myb family transcription factor APL
TrEMBLA0A0Q3J5T90.0A0A0Q3J5T9_BRADI; Uncharacterized protein
STRINGBRADI3G05500.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.21e-85G2-like family protein
Publications ? help Back to Top
  1. Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
    Vascular gene expression: a hypothesis.
    Front Plant Sci, 2013. 4: p. 261
    [PMID:23882276]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kondo Y, et al.
    Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
    Plant Cell, 2016. 28(6): p. 1250-62
    [PMID:27194709]
  4. Shibuta M,Abe M
    FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
    Plant Cell Physiol., 2017. 58(11): p. 2017-2025
    [PMID:29036620]