PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g03810.2.p
Common NameBRADI_3g03810
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 219aa    MW: 22801.3 Da    PI: 8.6405
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g03810.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.51.2e-15148182133
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                       C+nCg+++  Tp++R+gp+g++ LCnaCGl ++kk
  Bradi3g03810.2.p 148 CQNCGVSSdtTPMMRKGPNGQRILCNACGLVWAKK 182
                       *******99************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513209.0783974IPR010399Tify domain
PfamPF062002.0E-64164IPR010399Tify domain
PROSITE profilePS5101711.99572114IPR010402CCT domain
PfamPF062037.9E-1572114IPR010402CCT domain
SMARTSM004011.8E-7142199IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-10145194No hitNo description
CDDcd002026.47E-12147182No hitNo description
Gene3DG3DSA:3.30.50.108.6E-14147183IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.8E-13148183IPR000679Zinc finger, GATA-type
PROSITE patternPS003440148175IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MAGGGEQGAV PMDADADADP AAAAAAQAQL HGAAANADAA ASNTTLTLSY QGEVFVFESV  60
SPDKKSKNTA HRMASLLRFR EKRGRRNFDN KIHYPVRKEV AHRLQRNRGQ FASSKAKAGE  120
GAASGTAADG SKNWGAMEDQ TPYTAAICQN CGVSSDTTPM MRKGPNGQRI LCNACGLVWA  180
KKQNGMTEAA PTDNEQQRIA IEVAPGAQPA PAANGNDS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g03810.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755899.11e-116GATA transcription factor 17
SwissprotQ5Z4U52e-59GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A0Q3PV761e-160A0A0Q3PV76_BRADI; Uncharacterized protein
STRINGBRADI3G03810.11e-122(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-36ZIM-like 1