PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g03800.1.p
Common NameBRADI_3g03800, LOC100846018
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 359aa    MW: 38303.3 Da    PI: 5.0774
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g03800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.72.4e-16265302136
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
                       C +Cg ++  Tp++R+gpdg++tLCnaCGl ++ kg++
  Bradi3g03800.1.p 265 CKHCGKSSdmTPMMRKGPDGPRTLCNACGLSWANKGHM 302
                       ***********************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009796.0E-8128163IPR010399Tify domain
PROSITE profilePS5132013.654128163IPR010399Tify domain
PfamPF062003.9E-11130162IPR010399Tify domain
PfamPF062031.3E-16190232IPR010402CCT domain
PROSITE profilePS5101712.967190232IPR010402CCT domain
SMARTSM004014.4E-11259312IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.47E-11263315No hitNo description
Gene3DG3DSA:3.30.50.102.1E-14264306IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.90E-14264308No hitNo description
PROSITE patternPS003440265292IPR000679Zinc finger, GATA-type
PfamPF003206.1E-14265302IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MSGHHDATKP YQPRRGPERP PPPPQPAEGD ADAGAVPEAE AEPLAMEQYE PEPLQYEPHP  60
EHEEEEMEEG DEEEEDEEEG EGGHGHEYAY DYGTGEAVPM DADAAPHAQM QGAMLPMPAN  120
AEAGGGGPHA ASNTLTLSFN GEVFVFESVS PDKVQAVLLL LGGRELAPGL GGGPSSSASY  180
SKRMNYHPHR MASLMRFRQK RSERNFDKKI RYSVRKEVAH RMQRHKGQFT SAKAKAEDGA  240
SPVTTSDGLT NWGAVEGRPP SAAICKHCGK SSDMTPMMRK GPDGPRTLCN ACGLSWANKG  300
HMRDISKCST APLQVVPPAN SDAPNGTTEA APVDKQQHLA IEAAPVVQPA PAANGHDS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g03800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574659.10.0GATA transcription factor 17
SwissprotQ6Z4331e-106GAT17_ORYSJ; GATA transcription factor 17
TrEMBLI1HX690.0I1HX69_BRADI; Uncharacterized protein
STRINGBRADI3G03800.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.11e-54ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]