PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g60020.1.p
Common NameBRADI_2g60020, LOC100833261
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 528aa    MW: 55757.9 Da    PI: 8.2481
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g60020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05125147123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++C+k F r  nL+ H r H
  Bradi2g60020.1.p 125 FVCEICHKGFQRDQNLQLHRRGH 147
                       89*******************88 PP

2zf-C2H210.90.0015210232123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ Cgk++  +s+ k H +++
  Bradi2g60020.1.p 210 WRCERCGKRYAVHSDWKAHSKLC 232
                       58*****************9877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.21E-7124147No hitNo description
Gene3DG3DSA:3.30.160.608.0E-5124147IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.637125147IPR007087Zinc finger, C2H2
SMARTSM003550.046125147IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280127147IPR007087Zinc finger, C2H2
SMARTSM0035595175205IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.8E-4198230IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.21E-7205230No hitNo description
SMARTSM00355160210230IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MCACMSGCKA YPSCMPAMAC GGGAARECFS SGSASNTGEA VPGPGEDQFR VPYHGKPFLS  60
SPAAMGDLRH TAACAGNDEP NPLLPSTALP VPKKTKKKRS LPGTPDPSAE VIALSPTTLM  120
ATNRFVCEIC HKGFQRDQNL QLHRRGHNLP WKLRQRGSGS GSGEGPGSLP RKRAYVCPEP  180
SCVHHDPRRA LGDLTGIKKH FSRKHGEKKW RCERCGKRYA VHSDWKAHSK LCGSREYRCH  240
CGTLFSRRDS FVTHRAFCDA LAQENNKMAR PLSMATVASA LQGQGGQGQQ HGLLQPSAAS  300
DRTQDVGIDI DNNDTADGDG FGTDAKSPHL KMFSDTAAED DDNPLGCMLS SLGGAAPYSP  360
SPATMAGTKL SLLGLSGPSD SSMGFSPSGL ASMSATALLQ KAAQMGATTS SGYGVGLGST  420
MAGLACQPNP GPFEPMRPLG PYDGLPLRGA HVVGFDVGGL MPGQLYGDEA HDIGAMTRAV  480
RSMTKRESQM EPRQAEEDGR VVDYMGVQNQ TAFGGISPFA HHLDPWA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-30206269366Zinc finger protein JACKDAW
5b3h_F9e-30206269366Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g60020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0703901e-161AK070390.1 Oryza sativa Japonica Group cDNA clone:J023050E05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567443.30.0protein indeterminate-domain 2
TrEMBLA0A0Q3GLR80.0A0A0Q3GLR8_BRADI; Uncharacterized protein
STRINGBRADI2G60020.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125542534
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.13e-98indeterminate(ID)-domain 2