PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g41550.1.p
Common NameBRADI_2g41550, LOC100835399
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 502aa    MW: 54515.8 Da    PI: 8.4147
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g41550.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.5e-0581101323
                       ETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                       C++Cgk F r  nL+ H r H
  Bradi2g41550.1.p  81 CEICGKGFQRDQNLQLHRRGH 101
                       *******************88 PP

2zf-C2H211.20.0011156178123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC +C+k +  +s+ k H + +
  Bradi2g41550.1.p 156 WKCDKCSKKYAVQSDWKAHSKIC 178
                       58*****************9876 PP

3zf-C2H211.60.00087186204523
                       TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                       dCg++Fsr++++ +H   +
  Bradi2g41550.1.p 186 DCGTVFSRRDSFITHRAFC 204
                       9**************8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.37E-878101No hitNo description
Gene3DG3DSA:3.30.160.604.4E-578101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.48979101IPR007087Zinc finger, C2H2
SMARTSM003550.07679101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SMARTSM00355130121151IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.0E-4144177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.37E-8151176No hitNo description
SMARTSM00355150156176IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MFHHHLQQQQ QQQLRRDQAE SADQDSSMSN LTTSASAGAN PPPPSSGSNK RKRSLPGNPD  60
PESEVVALSP ATLMATNRFL CEICGKGFQR DQNLQLHRRG HNLPWKLKQR GSKELVRKKV  120
YICPEASCVH HDPSRALGDL TGIKKHFFRK HGEKKWKCDK CSKKYAVQSD WKAHSKICGT  180
REYKCDCGTV FSRRDSFITH RAFCDALTEE SAKAIGGLPV SMAQHHQHAM LFSPPPPQHH  240
HIMHQDNLAA FQEHHHAMQQ QQVQQQHCNY AVKPEMQPWP TAAMPPYDDG DVHHHHALLQ  300
QPPLCNVVAN ATPQSSAAPT PQAHQQQQQQ MLPAPAAGAH LSATALLQKA AQMGATIGGS  360
AHYGTQMAGA ATSSAAANGN GNGAFGLGLS CLNNGNNQQQ QQQMMGLAAR TAGGRGSEVD  420
GEGMTRDFLG LRAFSHRDIL GLAGFDSTCM AAAVNNNNSS SSSAMAPACY EQPQQHGLGQ  480
STQPQQQQSS DEPWHGMSSH S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-33152213364Zinc finger protein JACKDAW
5b3h_F1e-33152213364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105118KLKQRGSKELVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g41550.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3628550.0AK362855.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2010K06.
GenBankAK3753510.0AK375351.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3091O14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231936.10.0protein indeterminate-domain 7
SwissprotQ8H1F51e-112IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A0Q3R4E50.0A0A0Q3R4E5_BRADI; Uncharacterized protein
STRINGBRADI2G41550.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.17e-93indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]