PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g36740.1.p
Common NameBRADI_2g36740, LOC100823250
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 484aa    MW: 50618.5 Da    PI: 6.5566
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g36740.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.87.2e-17308354455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn+ ErrRRdriN+++  L+el+P++      K +Ka++Le+A+eY+k Lq
  Bradi2g36740.1.p 308 VHNMSERRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 354
                       5*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-20302362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-21302362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.019304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.94E-18307358No hitNo description
PfamPF000102.5E-14308354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-17310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MLSGPGNDEL AELLWADDGP AFRRPPPLFP PFATTRPRPD LLAKHPAPLD AMRDLLAVQE  60
DEDAVPWLHY PIVGVDDDGG GHCAVPLPAE YCSPGLLPGY SGALPAAVAG KEAGDAHAQP  120
STSHGGAVGV PKQQPRPSGG ESVLNFTFFS RPLHRPPAPA PVESMSTAAV TTNRLRSTPL  180
FSEQRMAWLQ PPPPKVTTAA AAPAPPPPAP APVTLRHPEP APPLTRLQPE ARAPESAPAP  240
LPPAATATTS SVCSDNGDRS HQLKRSSHQA AAEWSLSQDD EDLDDEAGGL RRSAAGARST  300
KRGRTAEVHN MSERRRRDRI NEKMRALQEL IPNCNKIDKA SMLEEAIEYL KTLQLQVQMM  360
SSMGPAAAAA GLCVPPMLAM QMAPMGMGMG MGMAHFHHHH LGAMGFGMGA AFDPRLVAAA  420
AAAQFPCGPM PTFAFPGAPA MPSMPPFPQT APAAAAGAHF VINNASGGAQ PEQAPDNHPA  480
ASP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1312317ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as negative regulator of grain size. Binds the transcription factor ILI6 and forms a heterodimer of antagonistic bHLH transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. May be involved in the control of lamina inclination through brassinosteroid signaling pathway. {ECO:0000269|PubMed:22363621}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g36740.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231744.20.0transcription factor APG
SwissprotQ6AT901e-69APG_ORYSJ; Transcription factor APG
TrEMBLA0A0Q3G8E80.0A0A0Q3G8E8_BRADI; Uncharacterized protein
STRINGBRADI2G36740.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.24e-30phytochrome interacting factor 3
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]