PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g22810.1.p
Common NameBRADI_2g22810, LOC100829691
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 446aa    MW: 47705.1 Da    PI: 4.9734
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g22810.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.5e-13195246155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +r++h ++Er+RR+++N+ +  Lr+l+P +   + ++ + a+i   A+e+I++L+
  Bradi2g22810.1.p 195 QRMTHIAVERNRRRQMNDYLRVLRSLMPGS---YVQRGDQASIIGGAIEFIRELE 246
                       79****************************...9******************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.6E-13193249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.89E-14193250No hitNo description
PROSITE profilePS5088815.859194245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.24E-16194260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-10195246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-9200251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.811371445IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010377Biological Processguard cell fate commitment
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0005634Cellular Componentnucleus
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MEKQSEQGSN NQQQQQLDSF APLDGAAPDQ DQIIGGGAGA EMVDYMLGQQ TPPPPPPPHG  60
HVSSFDKLSF SDVLHFADFG PRLALNQPLS THHPADSDND EDSYFFRFQP SLPAAEDSDD  120
PTAQHAAVTT QGSGGDHGTV GGGVSESTTT LVQPQQQQQE TVGGGKGGGG GGAGNKSGRR  180
KRPRSTKTSE EVESQRMTHI AVERNRRRQM NDYLRVLRSL MPGSYVQRGD QASIIGGAIE  240
FIRELEQLIQ CLESQKRRRL YGDAPRPTAP DISTGAGAPP VVPPPATSSM LQHEQQAAPP  300
QGPPHHDAPA PFYVVPAPSP GTSLPLIPVI SDDGVAKGID DLDGGLGREE VAENKSCLAD  360
IEVRVLGADA VVKVLSRRRP EQLIKTIAVL EEMHLSILHT NITTIDQTVL YSFNVKIAGE  420
PRFTAEDIAG AVHQILSFID INYTL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163171GGKGGGGGG
2195206RMTHIAVERNRR
3255259KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g22810.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2521091e-105AK252109.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf148l20, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231276.10.0transcription factor FAMA
TrEMBLA0A0Q3G3G30.0A0A0Q3G3G3_BRADI; Uncharacterized protein
STRINGBRADI2G22810.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95023340
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.15e-45bHLH family protein