PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g21407.5.p
Common NameBRADI_2g21407
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 185aa    MW: 20790.4 Da    PI: 5.3422
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g21407.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like31.53.8e-101203655
           G2-like 36 mkvkgLtlehvkSHLQkYRl 55
                      m+v+g+t++hvkSHLQkYRl
  Bradi2g21407.5.p  1 MGVPGITIYHVKSHLQKYRL 20
                      99*****************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-9121IPR009057Homeodomain-like
PfamPF143792.7E-245398IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MGVPGITIYH VKSHLQKYRL AKYIPESPAE GSKDEKKDSS DSLSNTDSAP GLQINEALKM  60
QMEVQKRLHE QLEVQRQLQL RIEAQGKYLQ MIIEEQQKLG DSLEGSEERK LSHSPPSLDD  120
YPDSMHPSPK KPRMEDLSPD LARGVTQPRF ESHLIGPWDQ ELCGKNISDP AFQVDEFKAN  180
PGLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g21407.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3551770.0AK355177.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1016P09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568204.11e-132myb family transcription factor PHL7 isoform X4
RefseqXP_010231226.11e-131myb family transcription factor PHL7 isoform X1
SwissprotQ9SJW03e-46PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A0Q3K4E21e-131A0A0Q3K4E2_BRADI; Uncharacterized protein
TrEMBLA0A2K2D9R41e-132A0A2K2D9R4_BRADI; Uncharacterized protein
TrEMBLI1HI631e-131I1HI63_BRADI; Uncharacterized protein
STRINGBRADI2G21407.11e-129(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.26e-28G2-like family protein