PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g21060.1.p
Common NameBRADI_2g21060, LOC100830728
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 237aa    MW: 23849.8 Da    PI: 9.0153
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g21060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.32.9e-213485156
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                      ++y+GVr ++ +gr++AeIrdp    k+ r++lg+++taeeAa+a++aa+++++g+
  Bradi2g21060.1.p 34 PHYRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTYDTAEEAARAYDAAAREYRGN 85
                      68********.**********83...36**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.01E-183492No hitNo description
PfamPF008477.3E-153484IPR001471AP2/ERF domain
PROSITE profilePS5103224.2633592IPR001471AP2/ERF domain
SMARTSM003803.3E-363598IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-233593IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-323592IPR001471AP2/ERF domain
PRINTSPR003673.2E-113647IPR001471AP2/ERF domain
PRINTSPR003673.2E-115874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MAPRTSDKTA TPAAAAAGTG LALGVGGGGA AVGPHYRGVR KRPWGRYAAE IRDPAKKSRV  60
WLGTYDTAEE AARAYDAAAR EYRGNKAKTN FPFPSAAVTG GGGSSNSSTV ESLGGDVQDQ  120
APMQAIPLPP PSLELDLFHR AAAAAAGPGG MRGFPFTSYP LSHPYYFFGQ AAAAAAAAGC  180
HALKLSPPVT VVATVSPSDS GSSSVVDLAP SPPAVSAKKA VVVFDLDLNC PPPAES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-223193164ATERF1
3gcc_A3e-223193164ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g21060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568185.11e-167ethylene-responsive transcription factor 8
TrEMBLI1HI191e-166I1HI19_BRADI; Uncharacterized protein
STRINGBRADI2G21060.11e-166(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.16e-18erf domain protein 9