PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g08480.1.p
Common NameBRADI_2g08480, LOC100825498
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LBD
Protein Properties Length: 235aa    MW: 24546.4 Da    PI: 9.2659
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g08480.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260103.81.5e-3220119199
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       aCa+Ck++rrkC+++C la yfpa+++++f+++h +FG++n++kl+ka  +ee r++a+++l++eA++r rdP +G+++ ++ l+++ + l+a
  Bradi2g08480.1.p  20 ACAVCKHQRRKCEPNCELAAYFPANRMNDFRALHLVFGVANLTKLIKANATEEaRRRAAETLTWEARWRERDPSEGCYREVSCLRRENAVLRA 112
                       7**********************************************9966666*************************************** PP

            DUF260  93 elallke 99 
                       e a+l++
  Bradi2g08480.1.p 113 ENAALRR 119
                       9998775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.56219121IPR004883Lateral organ boundaries, LOB
PfamPF031953.0E-2920117IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MTGGLNGNGV AGIGNGGSGA CAVCKHQRRK CEPNCELAAY FPANRMNDFR ALHLVFGVAN  60
LTKLIKANAT EEARRRAAET LTWEARWRER DPSEGCYREV SCLRRENAVL RAENAALRRR  120
ADQCASCCCG TTVLQQQQQQ QQMLLVSAYN GARPPVLHGV SNGSVLPGSF VGGCYNNGGN  180
NNAGGGGRGA NGNGAMPPAR PPVAQSTTLI GYHAVSNGGA GAGQTDSRDK SGAR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-16161137103LOB family transfactor Ramosa2.1
5ly0_B2e-16161137103LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g08480.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-134HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314390.11e-170LOB domain-containing protein 7
TrEMBLI1HDS91e-169I1HDS9_BRADI; Uncharacterized protein
STRINGBRADI2G08480.11e-170(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130442833
Representative plantOGRP1421444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.11e-13LOB domain-containing protein 2