PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g08287.4.p
Common NameBRADI_2g08287
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 407aa    MW: 43824.9 Da    PI: 5.3604
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g08287.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.12.6e-25211266156
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvk.gLtlehvkSHLQkYRla 56 
                       k +++WtpeLH+rFv+aveqL G++kA+P++ilelm+ + +Lt+++++SHLQkYR++
  Bradi2g08287.4.p 211 KVKVDWTPELHRRFVQAVEQL-GIDKAVPSRILELMGNEySLTRHNIASHLQKYRSH 266
                       5689*****************.**************87658**************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.796208268IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-24209269IPR009057Homeodomain-like
SuperFamilySSF466891.77E-16210269IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-24211266IPR006447Myb domain, plants
PfamPF002492.7E-8214264IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MLEVASLRSP KADQVFGLGL GGDHSHVGLG FPESGGVDDD DFLLDFIDFS TCDMPFFHVD  60
GDILPDLEVD SADLLALDFA SSSSPDEPSL EDGRWGSAVD DEAVTKAMEV GVEAELGGDS  120
MDMELPRDEN HKDEKLEVLL EDEKDEKKHN NNVVAGDEAV SSAVTSTEDS AAAAASDNKS  180
SSASAEGQSK RTSTKTPSAA VAGKSSHGRR KVKVDWTPEL HRRFVQAVEQ LGIDKAVPSR  240
ILELMGNEYS LTRHNIASHL QKYRSHRKHL MAREAEAASW TQKRQMYAAA AGVAPRKPDG  300
AAAGPWVVPT IGFPPPGTMP PPPPPTAHHP GAQPPPFCRP LHVWGHPSAA AGVDAPAHPQ  360
MLPIWPRHLA PPPAWAHQPP VDPAYWHQQY NVRVHIHLSI PLLAFT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00022PBMTransfer from AT2G20570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g08287.4.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565554.10.0probable transcription factor GLK2 isoform X1
SwissprotQ5NAN54e-89GLK2_ORYSJ; Probable transcription factor GLK2
TrEMBLA0A0Q3QPX40.0A0A0Q3QPX4_BRADI; Uncharacterized protein
STRINGBRADI2G08287.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.15e-52GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]