PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g06890.3.p
Common NameBRADI_2g06890, LOC100827760
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TCP
Protein Properties Length: 480aa    MW: 49382.6 Da    PI: 6.9546
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g06890.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.11.6e-3488187283
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssasec..eae 76 
                       +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai+ l  +                 ++++s++  +++
  Bradi2g06890.3.p  88 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDSLDVLpawqptnvapgpgnagAAPPSSSThpDDS 180
                       79**************************************************************88888888888877764444444442222 PP

               TCP  77 sssssas 83 
                       +++s ++
  Bradi2g06890.3.p 181 AENSDDQ 187
                       2222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.6E-3088153IPR005333Transcription factor, TCP
PROSITE profilePS5136932.80190148IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MGDPGGHHHH GLQTQLLSFG GVHHMHQFTA QAMQTQPPAS SASQSRARGG RGGGEIVAAA  60
AAPGTRVRGG GGGGEIVAVQ GGHIVRSTGR KDRHSKVCTA RGPRDRRVRL SAHTAIQFYD  120
VQDRLGYDRP SKAVDWLIKN AKDAIDSLDV LPAWQPTNVA PGPGNAGAAP PSSSTHPDDS  180
AENSDDQAQA ITIAAHASFD FASGGGGGGG GGGTGGGGIS FLPPSLDSDS IADTIKSFFP  240
MGGTAGGGEP SSSTVAAGSH SSAAIGFQSY TPDLLSRTGS QSQELRLSLQ PLPDPMFHHH  300
DHGQHEQQQH RSHGHGGNGT APQQALFPGA ANYSSFGGGG AMWATEQPQS QRIVPWSVPD  360
PGGGGSTGSY LFNVSQQAAH MQAALSGQSQ FFFQRGPLQS SNQPSDRGWP ESVEADNNNN  420
NPMQQHNHQG AMNPSISAIG FAPGVSFSGF RIPARIQGDE EHNGGNGDKP PSVSSASHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-2095148154Putative transcription factor PCF6
5zkt_B6e-2095148154Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202213SGGGGGGGGGGT
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g06890.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753598.10.0transcription factor PCF5
SwissprotQ8LT071e-165PCF5_ORYSJ; Transcription factor PCF5
TrEMBLA0A0Q3ISB00.0A0A0Q3ISB0_BRADI; Uncharacterized protein
STRINGBRADI2G06890.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.37e-67TCP family protein