PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g05900.1.p
Common NameBRADI_2g05900, LOC100835824
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 467aa    MW: 49953.9 Da    PI: 8.5035
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g05900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.52.7e-066890123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C++Cgk F r  nL+ H r H
  Bradi2g05900.1.p 68 YVCEICGKGFQRDQNLQLHRRGH 90
                      9********************88 PP

2zf-C2H211.90.00068145167123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C  Cgk +  +s+ k H +++
  Bradi2g05900.1.p 145 WRCDRCGKKYAVQSDWKAHSKVC 167
                       58*****************9877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.08E-86790No hitNo description
Gene3DG3DSA:3.30.160.606.0E-66890IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.8016890IPR007087Zinc finger, C2H2
SMARTSM003550.00696890IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SMARTSM0035538110140IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.2E-4133165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.08E-8140165No hitNo description
SMARTSM00355180145165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MMLKDLATIQ QAEENMSNLT SASGDQTSVS SHPLPPPSKK KRSLPGNPDP EAEVIALSPR  60
ALMATNRYVC EICGKGFQRD QNLQLHRRGH NLPWKLKQRN PNEAVRKKVY VCPEPGCVHH  120
DPARALGDLT GIKKHFSRKH GEKRWRCDRC GKKYAVQSDW KAHSKVCGTR EYRCDCGTLF  180
SRRDSFITHR AFCDALAEES ARATVEGQQQ LQVQGMLFSH AGGDEAGFQM PVLDPAAQQQ  240
QHLQGSQLIH ELCLKRENHH HQQQQQQFAP SSWLSEQQQI EMAGGEQGAS SPAMFVNGTP  300
AAESSSTQQQ PGPGSGGTSS FAFSSPAPAH MSATALLQKA AQMGATLSRP SCQGQMAAAT  360
LSTNAPVLEA VATTSNNANN LTGTATAIGA GFGVQLPRTN RAAGGNDGLT RDFLGLRAFS  420
HGDMLGMAGF DPCGMPTSAS ASASAAVVYD QQGGGHHQSG SKPWHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-32141204366Zinc finger protein JACKDAW
5b3h_F2e-32141204366Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194107KLKQRNPNEAVRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g05900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2509710.0AK250971.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100p19, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565455.10.0protein indeterminate-domain 11
TrEMBLA0A0Q3QNV80.0A0A0Q3QNV8_BRADI; Uncharacterized protein
STRINGBRADI2G05900.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-106indeterminate(ID)-domain 7