PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g05700.6.p
Common NameBRADI_2g05700, LOC100823359
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 441aa    MW: 48960.7 Da    PI: 7.7203
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g05700.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.91.7e-35451871128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 
                       lp+G++F+Ptd+el+ e+L++kv+++       +++  +i+++d    i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+      
  Bradi2g05700.6.p  45 LPAGVKFDPTDQELI-EHLEAKVREEGsrshplIDE--FIPTIDgedgICYTHPEKLP-GVTMDGLSKHFFHRPSKAYTTGTRKRRKiqtecd 133
                       799************.99******999667544333..3444433445**********.455567899******************7566666 PP

               NAM  78 ..tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                           + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Bradi2g05700.6.p 134 vqKGETRWHKTGKTRPVMA-GGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 187
                       4433778************.99************5547999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-4039206IPR003441NAC domain
PROSITE profilePS5100534.39645206IPR003441NAC domain
PfamPF023653.2E-1646187IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MSSRGHISSS ELIDAKLEEH RISTARHCPN CRHKLDCKPK DWLGLPAGVK FDPTDQELIE  60
HLEAKVREEG SRSHPLIDEF IPTIDGEDGI CYTHPEKLPG VTMDGLSKHF FHRPSKAYTT  120
GTRKRRKIQT ECDVQKGETR WHKTGKTRPV MAGGRQKGCK KILVLYTNFG KHRKPEKTNW  180
VMHQYHLGDL EEEKEGELVV CKIFYQTQPR QCSWTTATGS GVAAAAATHQ LQLQEQRRRD  240
STGSGSSSSR DHEAAAVSYP AGAAGYAVAA AVEMQHLKQA AAGGDHFSFA PFRKSFEEVG  300
GIGGDQVPSD HQLGRSEPHH AGQEQQPHRP VLGTTAVPAT AFLISRPTNP VSATVPPPIQ  360
HTSVVLDHDQ QFQVPAIFLH HDKFQQQQQQ KIDHRRSAGL EELIRGCTSA CTKGDTSISQ  420
SQETEWPYPY WPSDNQDHHG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-134318713140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g05700.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0617160.0AK061716.1 Oryza sativa Japonica Group cDNA clone:001-037-H07, full insert sequence.
GenBankAK1061520.0AK106152.1 Oryza sativa Japonica Group cDNA clone:001-207-H11, full insert sequence.
GenBankEU5414720.0EU541472.1 Oryza sativa Japonica Group cultivar Dongjin NAC-type transcription factor (NAC075) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230572.10.0NAC domain-containing protein 75 isoform X3
SwissprotQ9M0F81e-146NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A0Q3IB900.0A0A0Q3IB90_BRADI; Uncharacterized protein
STRINGBRADI2G05700.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-115NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]