PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g03427.1.p
Common NameBRADI_2g03427, LOC100823554
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 417aa    MW: 44708.4 Da    PI: 7.0722
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g03427.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.50.000273063441255
                       HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       R +++ ++++ L++l+ +      +K + a++L +A+ YI+ Lq
  Bradi2g03427.1.p 306 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYINFLQ 344
                       7788899*********998.....8*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.211294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.50E-5304348No hitNo description
SuperFamilySSF474591.1E-10304356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-8308351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MMASSSSSSD LSAADHHHLI LQGDLPWRPP SSSLPLAPAL QHAIGGTHQQ WNQPLILDQL  60
SPDELELLLQ SAQAQLHHNH SHSHLPAAAS PLTAAVAPHQ LSSLLMMQEL GFQWSSAVTE  120
TTADTSSSSQ QHQDAVLKDD DQEEAPKLAS VGSLINSCRH RSSPMTVDYN DIVVDHGGGG  180
AVVLPSFNVS LMQKPCPVVG GEAFEMLCKS GQLAMMPTSG TRLLGSEHMA YDYGPPAHHH  240
RLLQGPSSSY KMGTVPAALL SGNGNVSSCH DEQQLQLAAA VSSISSKKKS TRLRPSTTII  300
PSFKVRKEKL GDRIAALQQL VSPFGKTDTA SVLMEAIGYI NFLQDQVETL SGPYMKSSKH  360
KKARTTQQRG PSNTGDQKEE AKLDLRSRGL CLVPLSCTSY VTNENGVWAP PNFRGN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g03427.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-43HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314930.10.0transcription factor bHLH110 isoform X1
TrEMBLI1HC340.0I1HC34_BRADI; Uncharacterized protein
STRINGBRADI2G03427.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72403242
Representative plantOGRP13421337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.11e-40bHLH family protein