PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g72449.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 339aa    MW: 35809.2 Da    PI: 4.5201
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g72449.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.2e-18109158255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp+    +  r++lg+f +ae Aa a++ a++ ++g
  Bradi1g72449.1.p 109 QYRGVRRRP-WGKWAAEIRDPV----KgVRVWLGTFPSAEAAALAYDDAALGIRG 158
                       69*******.**********75....44**********************98887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.29E-18108166No hitNo description
PfamPF008471.3E-11109158IPR001471AP2/ERF domain
PROSITE profilePS5103224.553109166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-31109167IPR001471AP2/ERF domain
SMARTSM003802.0E-39109172IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-22109167IPR016177DNA-binding domain
PRINTSPR003673.5E-10110121IPR001471AP2/ERF domain
PRINTSPR003673.5E-10132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MCGGAILAEL IPTAPARRVT AGHLWPGKGG KNQQQQKRRS GADDFEAAFR EFDEDSEEEE  60
RQEQVEVVMA EEVEEVAESK PFAFNASSKK ASSGGRPGRR GGSGRKPAQY RGVRRRPWGK  120
WAAEIRDPVK GVRVWLGTFP SAEAAALAYD DAALGIRGPR AKLNFPPSSS SSAAANAGLG  180
TRKRGRAADP VAKATPVVDL VHEDAAAVDA HRSSGMKHEA AESSESSGSA LPDFSWQGMS  240
ASALPEIEQQ LGCGGAAKRP RAAEDTDEAS ADDSDALFDG LYFAQDPFAF FDGGAYESLD  300
CLFSGDAVQS NANAAADETV GLWSFDDDCL VDESSLSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21106171268ATERF1
3gcc_A2e-21106171268ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g72449.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024313809.10.0ethylene-responsive transcription factor ERF073-like
TrEMBLI1H8Y90.0I1H8Y9_BRADI; Uncharacterized protein
STRINGBRADI1G72450.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.18e-20ERF family protein