PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g68730.1.p
Common NameBRADI_1g68730, LOC100827246
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 431aa    MW: 45534.3 Da    PI: 9.0331
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g68730.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.37.2e-0778100123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C++Cg+ F r  nL+ H r+H
  Bradi1g68730.1.p  78 YVCEICGQGFQREQNLQMHRRRH 100
                       9*********************9 PP

2zf-C2H210.80.0016185207123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C  C k +  +s++k H++t+
  Bradi1g68730.1.p 185 WVCARCAKGYAVQSDYKAHLKTC 207
                       58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-577100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.57E-777100No hitNo description
SMARTSM003556.5E-478100IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.75978100IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SMARTSM00355110149179IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.57E-7180205No hitNo description
SMARTSM00355270185212IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MALAVKSHHQ MLASSSTSSS SPSSQPLPPP PPAATSSSCL PADQPSPAKR KRRPPGTPDP  60
DAEVVALSPR TLLESDRYVC EICGQGFQRE QNLQMHRRRH KVPWRLVKRA ATTAGTTDQD  120
GGGGGTASAG GTGGGAAAAA STVPRKRVFV CPEPSCLHHD PAHALGDLVG IKKHFRRKHG  180
GRRQWVCARC AKGYAVQSDY KAHLKTCGTR GHSCDCGRVF SRVESFIEHQ DACNSGRMRA  240
EAVPSTVALP VIRPAVLSRP PPPPSELQLL PAAATKPPLA ATPVFSATTH AATATTTTKL  300
ELSIGRDDHD HEEGEEEEAM RRAMEEKAAA DGERERAREE AAAAERALEE ARRARHHARG  360
ELEAACALRD HAARLLAQVT CHACRQQRSF ADAAGVHVVV SMGVAGGEGH GGSAAAREAL  420
MVRARGGLGL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-16181235357Zinc finger protein JACKDAW
5b3h_F1e-16181235357Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g68730.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3761501e-140AK376150.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3116F03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561843.10.0protein indeterminate-domain 16
SwissprotQ9C9X71e-108IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLI1H7N30.0I1H7N3_BRADI; Uncharacterized protein
STRINGBRADI1G68730.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-85C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Arendsee ZW,Li L,Wurtele ES
    Coming of age: orphan genes in plants.
    Trends Plant Sci., 2014. 19(11): p. 698-708
    [PMID:25151064]
  2. Qu Y, et al.
    Peroxisomal CuAO╬ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]