PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g68560.2.p
Common NameBRADI_1g68560, LOC100827008
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 385aa    MW: 40974.3 Da    PI: 9.7859
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g68560.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_164.42.1e-20300362163
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       e+e+kr++rkq+NRe+ArrsR+RK+ae ee +++++ L++eN++Lk+el++l++++++l+se+
  Bradi1g68560.2.p 300 EREVKRQKRKQSNRESARRSRLRKQAEWEEVANRADLLKQENSSLKEELKRLQEKCDSLTSEN 362
                       799**********************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.5E-281101IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165966.7E-19140268No hitNo description
Gene3DG3DSA:1.20.5.1702.4E-14296358No hitNo description
SMARTSM003381.6E-19300364IPR004827Basic-leucine zipper domain
PfamPF001706.6E-18300362IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.553302365IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.88E-9303359No hitNo description
CDDcd147027.72E-22305356No hitNo description
PROSITE patternPS000360307322IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MGKGDGTTRS KSQKSSATQN EQSTPTNPPT AYPDWSQFQA YYNVPGTAPM TPPAFYHSAV  60
APSPQGHPYM WGPQMMPPYG TPPPYATMYA QGTPYQQAPM PPGSHPYSPY PVQASNGTVQ  120
TPPSGAGGSE TDKSSKNKRK TPLKRSKGSL GSLDVVTVKN KMSPAKPLAS SSNEGSSQSE  180
SGSGSYSEGS STNSKSGSRT KDEHGQGNDA SNKGATASSA VEPTQVSSGP VVLNPMMPYW  240
PVPPPMAGPA GPATGVNMGM DYWGAPTSVP MHGKVAAAPT SAPSSNSRDI ILSDPAIKDE  300
REVKRQKRKQ SNRESARRSR LRKQAEWEEV ANRADLLKQE NSSLKEELKR LQEKCDSLTS  360
ENTSLHEKLK ELDGEKSNGN SCKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316322RRSRLRK
2316323RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g68560.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankWHTHBP1AC0.0D12920.2 Triticum aestivum mRNA for transcription factor HBP-1a(c14), complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228895.10.0bZIP transcription factor 16
RefseqXP_010228896.10.0bZIP transcription factor 16
RefseqXP_010228897.10.0bZIP transcription factor 16
RefseqXP_010228898.10.0bZIP transcription factor 16
RefseqXP_014753065.10.0bZIP transcription factor 16
SwissprotQ501B22e-86BZP16_ARATH; bZIP transcription factor 16
TrEMBLI1H7L40.0I1H7L4_BRADI; Uncharacterized protein
STRINGBRADI1G68560.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115063238
Representative plantOGRP7001767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-62basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]