PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g64240.1.p
Common NameBRADI_1g64240
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 395aa    MW: 42751.2 Da    PI: 9.2233
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g64240.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.74.5e-11120176155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++gr++A+++d  +   g krk  + g +  +++Aa+a++ a++k++g
  Bradi1g64240.1.p 120 SCYRGVTRHRWTGRYEAHLWDnTCRrEGqKRKGRQGG-YEKEDQAARAYDLAALKYWG 176
                       79*******************5555444666888866.5555**************98 PP

2AP249.88.7e-16221271356
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GV++++  grW A+I  +     +k  +lg+f t eeAa+a++ a++k++ge
  Bradi1g64240.1.p 221 YRGVTRHHHHGRWQARIGRVAG---NKDLYLGTFATQEEAAEAYDIAALKFRGE 271
                       9***************988532...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-8120176IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-14120185IPR016177DNA-binding domain
SMARTSM003808.2E-17121190IPR001471AP2/ERF domain
PROSITE profilePS5103217.346121184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-12121185IPR001471AP2/ERF domain
CDDcd000187.10E-17122184No hitNo description
PRINTSPR003676.5E-7122133IPR001471AP2/ERF domain
CDDcd000188.43E-23219280No hitNo description
SuperFamilySSF541716.54E-18219279IPR016177DNA-binding domain
PROSITE profilePS5103219.216220278IPR001471AP2/ERF domain
SMARTSM003801.9E-31220284IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-19220279IPR001471AP2/ERF domain
PfamPF008477.4E-11221271IPR001471AP2/ERF domain
PRINTSPR003676.5E-7260280IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MPPPTNGAMM LTSFPPPMGG MSSDALLFPS DGFSFSADDF FAPPPLAADP TRLPLAPSAC  60
LGHGYGSGSN SSTPDAITIA APTSPRVTTA ILAPVGGSSS APARAPAMPL VPSIMTQRTS  120
CYRGVTRHRW TGRYEAHLWD NTCRREGQKR KGRQGGYEKE DQAARAYDLA ALKYWGANAT  180
TNFPKESYIR EIKEMQSMSR HDLVASLRRK SSGFSRGASM YRGVTRHHHH GRWQARIGRV  240
AGNKDLYLGT FATQEEAAEA YDIAALKFRG ENAVTNFESS RYNLEAIARM DLPINVPRTR  300
LESHKPAAPE AQGQIAPVSA PPFSQQPSNN LQSHLFHSLL PLPPCEPLQA LPVPAGYSFG  360
EPSWPFGDVE QKVQLDSKME VAGGLLQLAN YAAN*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g64240.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1098391e-149AK109839.1 Oryza sativa Japonica Group cDNA clone:002-148-D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561687.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-101AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLI1H6510.0I1H651_BRADI; Uncharacterized protein
STRINGBRADI1G64240.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135792631
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.12e-87AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]