PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g63690.1.p
Common NameBRADI_1g63690, LOC100837299
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 351aa    MW: 39061.2 Da    PI: 7.9791
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g63690.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like109.22.1e-3447101155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       kprl+WtpeLH+rFveav+qLGG++kAtPkti++lm+v+gLtl+h+kSHLQkYRl
  Bradi1g63690.1.p  47 KPRLKWTPELHDRFVEAVNQLGGPDKATPKTIMRLMGVPGLTLYHLKSHLQKYRL 101
                       79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.83144104IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-3345102IPR009057Homeodomain-like
SuperFamilySSF466893.94E-1846102IPR009057Homeodomain-like
TIGRFAMsTIGR015578.3E-2547102IPR006447Myb domain, plants
PfamPF002491.7E-1049100IPR001005SANT/Myb domain
PfamPF143791.8E-25147194IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MYHHQQQLQR HSQLLSSRQT FPSERHLLLQ GGIVPGESGL VLSTDAKPRL KWTPELHDRF  60
VEAVNQLGGP DKATPKTIMR LMGVPGLTLY HLKSHLQKYR LSKNLHAQAN VGNSRNVVGC  120
TMATEKHSEG NGSPVSHHLG AQTNKSMHIG EALQMQIEVQ RRLHEQLEVQ RHLQLRIEAQ  180
GKYLQSVLEK AHETLAKQNT GSASLENAKM QLSELVSKVS TECLHNAFTG FEEIQGSQML  240
QTMQLGDGSV DSCLTACESQ RDQDILSISL SAKKGKEIGA MAFDLHMKEG HGNLFLEKLS  300
RRPPNHQEGH ERTDGFSISC QTTKLDLNIN ETNDGPQNCK KFDLNGFSWT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-2046103158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-2046103158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-2047103157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-2047103157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-2047103157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-2047103157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-2046103158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-2046103158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-2046103158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-2046103158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-2046103158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-2046103158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g63690.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558005.10.0myb-related protein 2
SwissprotQ9SQQ91e-107PHL9_ARATH; Myb-related protein 2
TrEMBLI1H5Y20.0I1H5Y2_BRADI; Uncharacterized protein
STRINGBRADI1G63690.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35743879
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-106G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]