PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g59750.1.p
Common NameBRADI_1g59750, LOC104582350
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 252aa    MW: 27733.3 Da    PI: 9.3728
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g59750.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000126183123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C+ C + F++   L  H+++H
  Bradi1g59750.1.p 61 YTCTFCRREFRSAQALGGHMNVH 83
                      9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.59E-65888No hitNo description
SMARTSM003550.00666183IPR015880Zinc finger, C2H2-like
PfamPF139121.9E-56184IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1576188IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAANYYWAGM WGGGGGGAST TTTTTTTTLV RSSFPAAAEA PSWEEQAFAR DVGCVWPPRS  60
YTCTFCRREF RSAQALGGHM NVHRRDRARL RQCASPPAPA PDDLHHHQQQ LTIPSPKSPQ  120
PATVTTTRAS PNNSYISTIL SAADKEIIIS NNNSNTKVFL SMPVFDATAR LDQSTDEERI  180
CRKRRRVDQQ PPAMVALPFF VRRRSPMPCE REEADHHGHA KVPKVMVSSP SPLHLALGRQ  240
EVDLELRLGT S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-135683229superman protein
2l1o_A4e-135683229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181185RKRRR
2182186KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g59750.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0058698e-37AP005869.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:B1026C12.
GenBankAP0149638e-37AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126158e-37CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
GenBankCT8361118e-37CT836111.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103M23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230127.10.0probable transcriptional regulator RABBIT EARS
TrEMBLI1H4I80.0I1H4I8_BRADI; Uncharacterized protein
STRINGBRADI1G59750.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78452943
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-25zinc-finger protein 10