PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g55051.1.p
Common NameBRADI_1g55051
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 244aa    MW: 26741.7 Da    PI: 9.0233
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g55051.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.96.3e-14950142
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                      +ri n+  r   f kR n + KKA ELS+LC+++v+v+++++
  Bradi1g55051.1.p  9 ERIPNDVARRAAFRKRVNRLTKKAGELSTLCNTKVCVLVYAE 50
                      6899************************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554559.68E-16183IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-10160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.745150IPR002100Transcription factor, MADS-box
CDDcd002663.85E-17384No hitNo description
PRINTSPR004041.6E-6323IPR002100Transcription factor, MADS-box
PfamPF003196.2E-131050IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-62338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-63859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MPRKQRSTER IPNDVARRAA FRKRVNRLTK KAGELSTLCN TKVCVLVYAE GEARPEVCPS  60
LAEAVPLLQR FTDTLEIEQF KKRVTHEDFL RQRMDKLTLQ IQKNLPENSE RDTAILLHQA  120
MAGRLEGGLE GLPPEKYASV RWMVQTRLRS IGECIAKLQG QMAGLHLRSL PVPVPAPLPY  180
QQEFASQKEI GSVNEVIRSD GGDVGTLVFT AGDGAGANTS AGGGFSWQWC ADLGGPSSSM  240
PPM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g55051.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693050.0KF469305.1 Brachypodium distachyon MADS-box transcription factor 9 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228259.20.0agamous-like MADS-box protein AGL80
TrEMBLA0A0Q3HCA81e-180A0A0Q3HCA8_BRADI; Uncharacterized protein
STRINGBRADI1G55040.11e-106(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.25e-21M-type_MADS family protein