PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g55041.1.p
Common NameBRADI_1g55041
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 196aa    MW: 21613.2 Da    PI: 10.0758
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g55041.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF23.19.7e-08950142
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                      +ri ++  r+  f + +n +  KA EL +LC+a+v+ +++++
  Bradi1g55041.1.p  9 ERIPDDVARHAAFRNLLNILTEKAGELATLCNAKVCGLVYAE 50
                      6899999*****************************999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-4160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.797150IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.23E-13394IPR002100Transcription factor, MADS-box
PfamPF003191.2E-71050IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MSRQKMALER IPDDVARHAA FRNLLNILTE KAGELATLCN AKVCGLVYAE GEAQPVVWPS  60
VAEAVPILQR FKATPEIKQY NKSVTQEDFL RQRMDKLKLQ IQKSAPENNR RDTALLLHKA  120
MRGQLQGGLE GLGIEKLTSV GWMVHMRLKG LRELIVKREE QAALQLQPLP APASASISGL  180
SSPNTSMQLD PLVPT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g55041.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228259.29e-68agamous-like MADS-box protein AGL80
TrEMBLA0A0Q3NSS41e-140A0A0Q3NSS4_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-17AGAMOUS-like 80