PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g54450.1.p
Common NameBRADI_1g54450, LOC100843318
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 257aa    MW: 27562.1 Da    PI: 9.5151
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g54450.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-182677155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                      +++ GVr+++ +grWvAeI+d      ++ r++lg+f tae+Aa+a+++a+  l+g
  Bradi1g54450.1.p 26 CKFVGVRQRP-SGRWVAEIKDT---TaHKIRVWLGTFETAEDAARAYDEAACLLRG 77
                      799*******.7*********4...2335**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-132677IPR001471AP2/ERF domain
CDDcd000182.03E-282687No hitNo description
SMARTSM003801.9E-352791IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-192785IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.2E-282785IPR001471AP2/ERF domain
PROSITE profilePS5103220.1122785IPR001471AP2/ERF domain
PRINTSPR003676.8E-82839IPR001471AP2/ERF domain
PRINTSPR003676.8E-85167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MELQFQQQQR QAECQAKGRR RSSSKCKFVG VRQRPSGRWV AEIKDTTAHK IRVWLGTFET  60
AEDAARAYDE AACLLRGSNT RTNFAAAVSP SPLTSRIRTL LTHKKLKKHT APPQLSMAHG  120
YGHAGPIVAD AAGSSTSSSS SISFPMSSSN QQQRVADKSY MAYQLIDRFD QQPWTAALGA  180
SVSPVAAGDA HGPVIPADVM RMGKKEDSGS ASASPGAAMS GVVQEQDRGF DIGSDPCGSL  240
WDLPPICQLS CRSLMY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-161884571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g54450.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276622e-65KJ727662.1 Zea mays clone pUT5589 AP2-EREBP transcription factor (EREB82) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228242.10.0ethylene-responsive transcription factor RAP2-11
TrEMBLI1H2S30.0I1H2S3_BRADI; Uncharacterized protein
STRINGBRADI1G54450.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-23related to AP2 11