PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g53656.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 103aa    MW: 10955.3 Da    PI: 6.9559
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g53656.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM28.34.9e-091663650
               NAM  6 rFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.kk 50
                       F+P+  e+v+++L + ++g++    +e+ i++vdiy++eP+dL  ++
  Bradi1g53656.1.p 16 SFNPSPVEVVTHFLPRLISGEPlpRGAEHLIHRVDIYNHEPKDLApAT 63
                      7*********************53333456**************6333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-71663IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MEEAEAELGE VFYLCSFNPS PVEVVTHFLP RLISGEPLPR GAEHLIHRVD IYNHEPKDLA  60
PATASSSRSP NARKGAAPGQ RASPAPAPGQ SRRQGTSTMN PV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233490.12e-34PREDICTED: putative NAC domain-containing protein 94
TrEMBLI1HQI83e-34I1HQI8_BRADI; Uncharacterized protein
STRINGBRADI2G46980.18e-34(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799