PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g49630.1.p
Common NameBRADI_1g49630, LOC100822666
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 632aa    MW: 66995.1 Da    PI: 6.3763
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g49630.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3764.7e-1152356091374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPi 90 
                       lv++L+ cAe + +g++e+a+ +Larl e asp+g +p++Rlaayf+eALa r a ++++l++  pp++ ++ +  ++e + al++++ v+Pi
  Bradi1g49630.1.p 235 LVRALMVCAESLGAGNHEAANYYLARLGESASPSGpTPLHRLAAYFAEALAIRAATTWPHLFHVSPPRHLTDLTddEEEDAVALRVLNSVTPI 327
                       6899*************************************************************999998766568888889999******* PP

              GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                       ++f h+t N+ +l++++g++rvH+iDfdi+qGlQWp+Llq+La+R+ ++p+++RiTgvg+    sk el+etg rL+ +A++lg+ fef+++v
  Bradi1g49630.1.p 328 PRFLHFTLNERLLREFDGHDRVHVIDFDIKQGLQWPSLLQSLAARRpDPPAHVRITGVGP----SKLELQETGARLSAVAASLGLAFEFHAVV 416
                       *******************************************66637888*********....***************************99 PP

              GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsl.ea 273
                       + rled++l++L+vk+gE +aVn+vl+ hrll++ ++++     +L+l +s+ ++++ + e+ea+  n++++  rf++al++y+alfd++ +a
  Bradi1g49630.1.p 417 ELRLEDVRLWMLHVKRGERVAVNCVLAAHRLLRDGGAMAA----FLSLARSTGADLLLLGEHEAEGlNGGRWEPRFARALRHYAALFDAVgAA 505
                       99******************************99999999....********************999***********************99* PP

              GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrve...eesgslvlgW 362
                       +l ++s +ri+ E++ ++rei+n+va ega+r erhe + +Wr+r+e+ GF+++ +++++a+q +++ r+v+  g y v    ++ + l+l W
  Bradi1g49630.1.p 506 GLDAASPARINAEEM-FAREIRNAVAFEGADRCERHEGFPQWRRRMEDGGFRNAGFGDREAMQGRMIARMVAPPGnYGVRaqgDDGEGLTLQW 597
                       ***************.*******************************************************9544477764444466677*** PP

              GRAS 363 kdrpLvsvSaWr 374
                        d+pL++vSaW+
  Bradi1g49630.1.p 598 LDNPLYTVSAWT 609
                       ***********6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.892209585IPR005202Transcription factor GRAS
PfamPF035141.6E-112235609IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MLAGFSLSSR HQMSSTAQRL PCGFSKRGGR GHGEGGAAAP RVAGDGRGGS SGACSFRAHP  60
APPVSQAVSW GATATAKPEP CVGDVGGGGW ERRSRALKRA HDEAAAVDEQ EEGEYGAVAR  120
AKRTRMMGGA GDEVWFHKSI AGPMPMIQAA AGGEEEEEEE KVFLVPSAAA FPHGMIHAAA  180
AGAGTSTLAP AKEEEYSKSP SSHSSSSSGT DGGSSAAMPL VMASSSQPEL EALELVRALM  240
VCAESLGAGN HEAANYYLAR LGESASPSGP TPLHRLAAYF AEALAIRAAT TWPHLFHVSP  300
PRHLTDLTDD EEEDAVALRV LNSVTPIPRF LHFTLNERLL REFDGHDRVH VIDFDIKQGL  360
QWPSLLQSLA ARRPDPPAHV RITGVGPSKL ELQETGARLS AVAASLGLAF EFHAVVELRL  420
EDVRLWMLHV KRGERVAVNC VLAAHRLLRD GGAMAAFLSL ARSTGADLLL LGEHEAEGLN  480
GGRWEPRFAR ALRHYAALFD AVGAAGLDAA SPARINAEEM FAREIRNAVA FEGADRCERH  540
EGFPQWRRRM EDGGFRNAGF GDREAMQGRM IARMVAPPGN YGVRAQGDDG EGLTLQWLDN  600
PLYTVSAWTP AGDGAGSTVS ASTTASHSLQ S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-5624261025379Protein SCARECROW
5b3h_D4e-5624261025379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g49630.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003557108.10.0protein DWARF AND LOW-TILLERING
SwissprotQ9LWU90.0DLT_ORYSJ; Protein DWARF AND LOW-TILLERING
TrEMBLI1H1540.0I1H154_BRADI; Uncharacterized protein
STRINGBRADI1G49630.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Representative plantOGRP55071521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-117GRAS family protein
Publications ? help Back to Top
  1. Tong H,Chu C
    Roles of DLT in fine modulation on brassinosteroid response in rice.
    Plant Signal Behav, 2009. 4(5): p. 438-9
    [PMID:19816111]
  2. Li W, et al.
    Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice.
    Planta, 2010. 232(6): p. 1383-96
    [PMID:20830595]
  3. Tong H, et al.
    DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice.
    Plant Cell, 2012. 24(6): p. 2562-77
    [PMID:22685166]
  4. Zhang C,Bai MY,Chong K
    Brassinosteroid-mediated regulation of agronomic traits in rice.
    Plant Cell Rep., 2014. 33(5): p. 683-96
    [PMID:24667992]
  5. Yang C,Shen W,He Y,Tian Z,Li J
    OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.
    PLoS Genet., 2016. 12(6): p. e1006118
    [PMID:27332964]