PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g45517.1.p
Common NameBRADI_1g45517, LOC100840502
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 228aa    MW: 26375 Da    PI: 9.6244
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g45517.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.42e-16132222199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f+k +t+s+v+   +l lp +f++++  +k ++  ++l de+  + e  +   k++    l++GW++F+ +++L +gD +vF+l++r++f  +
  Bradi1g45517.1.p 132 FVKPMTQSHVTGGFWLGLPTQFCRKYL-PK-RDERIILVDEEDDESETLYLALKRG----LSAGWRGFAIDHKLVDGDCLVFQLIERTKF--K 216
                       89************************4.32.4457999998888888888555555....9************************98888..8 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       v ++r+
  Bradi1g45517.1.p 217 VYIIRE 222
                       988886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.9E-24126223IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-20127223IPR015300DNA-binding pseudobarrel domain
CDDcd100171.75E-26130221No hitNo description
PfamPF023623.1E-14132222IPR003340B3 DNA binding domain
SMARTSM010191.7E-19132223IPR003340B3 DNA binding domain
PROSITE profilePS5086311.66132223IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAGAIPYEEQ RRRQVEENKR KLEELRLHHL SAAVREAAAK PSPAKSLKRK SRAQGEAGQD  60
VPLRRSGRVA SLPEQPKYRY EDSLAFEKKP RRTYSTRKDL TNRVYATDEA RDYTITKAEE  120
LQDKLGSDYP IFVKPMTQSH VTGGFWLGLP TQFCRKYLPK RDERIILVDE EDDESETLYL  180
ALKRGLSAGW RGFAIDHKLV DGDCLVFQLI ERTKFKVYII RESSYYE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g45517.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3743469e-49AK374346.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3061L19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227844.11e-167B3 domain-containing protein Os06g0194400
RefseqXP_010227845.11e-167B3 domain-containing protein Os06g0194400
SwissprotQ69V361e-122Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLI1GZP01e-165I1GZP0_BRADI; Uncharacterized protein
STRINGBRADI1G45517.11e-166(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-57B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]