PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g43840.2.p
Common NameBRADI_1g43840
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 463aa    MW: 51874.4 Da    PI: 4.4073
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g43840.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.31.9e-33391781128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sg 81 
                       lp+G++F+P+d+el+++ L+k+ ++       ++++   ++e  +i++++P++Lp  +k++ +  +fF+++ k+y+tg+rk+r ++     + 
  Bradi1g43840.2.p  39 LPKGVKFDPSDQELLSHLLAKHDKAGAephpfIDEFIPtVEEDdGICYTHPQKLP-GLKQDGSVSHFFHRTYKAYNTGTRKRRRINtgdlaDV 130
                       799************988877644444555443332322444435**********.667788899******************7552344467 PP

               NAM  82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       +W++tgk+k+v++ +g++ g+kk++v+y  + +  k++kt+Wvmh+y+l
  Bradi1g43840.2.p 131 RWHKTGKTKPVMV-DGKHLGCKKIMVLYmsTVKGGKPKKTNWVMHQYHL 178
                       8************.999***********6644666777*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-3731197IPR003441NAC domain
PROSITE profilePS5100531.53439197IPR003441NAC domain
PfamPF023657.0E-1540178IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000077Biological ProcessDNA damage checkpoint
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010332Biological Processresponse to gamma radiation
GO:0040020Biological Processregulation of meiotic nuclear division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MTGTSWLIDS QRIASKIKNV SGSMDLSKQK WVVHQWPGLP KGVKFDPSDQ ELLSHLLAKH  60
DKAGAEPHPF IDEFIPTVEE DDGICYTHPQ KLPGLKQDGS VSHFFHRTYK AYNTGTRKRR  120
RINTGDLADV RWHKTGKTKP VMVDGKHLGC KKIMVLYMST VKGGKPKKTN WVMHQYHLGT  180
GEDEQNGEYV VSKLFFQQQF KPGEKYAEEL TTADALETIA AEADLPDLPE PALDEQGEEH  240
ISSITNQEVL HNNEHTADRE ALPYQQFKPG EKNAQELTTA DALETIAAEE DLPDLPEPAL  300
DEREEDICSI TNQEVLHNNE HTADPEALPY QESRNCDITM EEKAAEEDAA YPSSEKPEDG  360
DNPSSQDPKW WDGESQFLLT SQQLAESLPC LDEFLQSQTS GDEQDTIKPK LADYANLPVE  420
DLKQDLEKCH ELGLSDADFR LSQIEFSQDS CTAAWAGGNM LD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116120RKRRR
2117121KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g43840.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7291471e-109KP729147.1 Stipa purpurea microsatellite ZH4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227769.10.0SUPPRESSOR OF GAMMA RESPONSE 1
TrEMBLA0A0Q3H6S90.0A0A0Q3H6S9_BRADI; Uncharacterized protein
STRINGBRADI1G43840.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-116NAC family protein