PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g38730.2.p
Common NameBRADI_1g38730
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 370aa    MW: 41371.7 Da    PI: 6.9228
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g38730.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.78e-52101401128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                       +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+e+d++k+ePwdL+   ++ +  ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk
  Bradi1g38730.2.p  10 VPPGFRFHPTDEELLYYYLRKKVAYEAIDL-DVIREIDLNKLEPWDLKDrcRIGTgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDK 101
                       69****************************.9***************943444442456********************************** PP

               NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++   + + +g++ktLvfy grap+g+ktdW+mheyrl
  Bradi1g38730.2.p 102 AIFLGsSARRIGMRKTLVFYVGRAPHGRKTDWIMHEYRL 140
                       ***9756677***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.14E-585165IPR003441NAC domain
PROSITE profilePS5100558.05410165IPR003441NAC domain
PfamPF023651.0E-2711140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MHPSSGAVSV PPGFRFHPTD EELLYYYLRK KVAYEAIDLD VIREIDLNKL EPWDLKDRCR  60
IGTGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLGSSAR RIGMRKTLVF  120
YVGRAPHGRK TDWIMHEYRL DEDNVDIQSG TLQEDGWVVC RVFTKKSYPR GINPAEMAAF  180
EDDELLHPFP GQAQASAAGA MQTSKHIHMN NPHLMHQQQQ HYDYPSFDAS MQLPQLMSTE  240
HELPSFLPGP PAVAMTSLDV ECSQNLMKLT SNGSSNGMLH HGCISTSGGD PRLAATDWSV  300
LDKLLASHQN LDQLFQGMVT ATAAAASMAP YQQQQQLMEL GSSNGNSSMQ RLPLQYLGCE  360
AADLLRFSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-52816715167NO APICAL MERISTEM PROTEIN
1ut4_B9e-52816715167NO APICAL MERISTEM PROTEIN
1ut7_A9e-52816715167NO APICAL MERISTEM PROTEIN
1ut7_B9e-52816715167NO APICAL MERISTEM PROTEIN
3swm_A1e-51816718170NAC domain-containing protein 19
3swm_B1e-51816718170NAC domain-containing protein 19
3swm_C1e-51816718170NAC domain-containing protein 19
3swm_D1e-51816718170NAC domain-containing protein 19
3swp_A1e-51816718170NAC domain-containing protein 19
3swp_B1e-51816718170NAC domain-containing protein 19
3swp_C1e-51816718170NAC domain-containing protein 19
3swp_D1e-51816718170NAC domain-containing protein 19
4dul_A9e-52816715167NAC domain-containing protein 19
4dul_B9e-52816715167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g38730.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024313114.10.0NAC domain-containing protein 76 isoform X1
SwissprotQ5Z6B61e-120NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBLA0A0Q3H6F40.0A0A0Q3H6F4_BRADI; Uncharacterized protein
STRINGBRADI1G38730.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34613781
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-90NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]