PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g38238.1.p
Common NameBRADI_1g38238
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 289aa    MW: 30812.3 Da    PI: 8.8241
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g38238.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-183484155
               AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      +++ GVr+++ +grWvAeI+d       +  r++lg+f tae+Aa+a+++a+  l+g
  Bradi1g38238.1.p 34 CKFVGVRQRP-SGRWVAEIKDtT-----HkIRVWLGTFETAEDAARAYDEAACLLRG 84
                      799*******.7*********33.....35**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.02E-303494No hitNo description
PfamPF008474.1E-133484IPR001471AP2/ERF domain
SMARTSM003801.8E-363598IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-193592IPR016177DNA-binding domain
PROSITE profilePS5103219.773592IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-283592IPR001471AP2/ERF domain
PRINTSPR003678.2E-83647IPR001471AP2/ERF domain
PRINTSPR003678.2E-85874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MELHFQHPQP QECQQPAKGV RRSSSSTSSS SSKCKFVGVR QRPSGRWVAE IKDTTHKIRV  60
WLGTFETAED AARAYDEAAC LLRGSNTRTN FAVASSPAPA SPQQPDSPLA SRIRTLLTHK  120
KLKKHHTAPR SPVAFTPPYA GNRNASAGNS NGGSASSSIS FAVSGNGVDL ARHAPNPCSH  180
QRVAEESYRT CQLINHFDHP PSWAAALNPA APPVAGSNAH CPEMPQGRMK AEKQEGSASA  240
SPDGAAAMST GFARAQQQVD GFDIGNDPCD SLWDLPPICQ LSCRSLMY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1435911471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g38238.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3684497e-84AK368449.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2073N10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024313313.10.0ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A0Q3H6C10.0A0A0Q3H6C1_BRADI; Uncharacterized protein
STRINGBRADI1G54450.11e-89(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.19e-24related to AP2 11