PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g37898.2.p
Common NameBRADI_1g37898, LOC100835793
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 487aa    MW: 52677.1 Da    PI: 7.2522
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g37898.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.36.7e-32542311128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...lelee.................vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgk 72 
                       lp+G++F+Ptd+el+ e+L++kv++     +                     +i+   +i++++P++Lp  v+++  + +fF++ +k+y+tg+
  Bradi1g37898.2.p  54 LPAGVKFDPTDQELI-EHLEAKVRSGGsaaT---ApameeaeshplidefipTIEGEdGICYTHPEKLP-GVSKDGLSRHFFHRPSKAYTTGT 141
                       799************.99******9995550...3444556678888887665776646**********.556667799************** PP

               NAM  73 rknra.................................tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       rk+r+                                  ++ +W++tgk+++v + +g++ g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Bradi1g37898.2.p 142 RKRRKiqppaatadasaaisssaaatgssasssqqqqmRSETRWHKTGKTRPVAV-GGRQRGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 231
                       ****88***************************9998756889************.99************5547999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-3447147IPR003441NAC domain
PROSITE profilePS5100526.56454250IPR003441NAC domain
PfamPF023657.3E-1555231IPR003441NAC domain
SuperFamilySSF1019412.09E-34181250IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MDGRAADAGG GTSSGGCGHP IGSRIEEHRK YMSESSCCSR CGHKIDRKLD WVGLPAGVKF  60
DPTDQELIEH LEAKVRSGGS AATAPAMEEA ESHPLIDEFI PTIEGEDGIC YTHPEKLPGV  120
SKDGLSRHFF HRPSKAYTTG TRKRRKIQPP AATADASAAI SSSAAATGSS ASSSQQQQMR  180
SETRWHKTGK TRPVAVGGRQ RGCKKILVLY TNFGKHRKPE KTNWVMHQYH LGESEEEREG  240
ELVVSKIFYQ TQPRQCGAVV SGTAEASVVD RRRDRAAAAP AAASHMQASS DIMTIAAAFT  300
GHGGAAGIDE FSFEQFRNSF DEVGTGASDH QVVQARADEG VLHRHQQQHQ VGEHDHRPRH  360
QLHYTGGLLQ EQQQRAAAVA ACHVSTPTDP ISTLIAAPRV HQGSFVLAAP ADQPYDHGAP  420
SYHQQEDERP HQTPKFDGRS TSGLEEVIMG CTSRRSKGGE SSGGKEGAGW HQYPSFWPSD  480
NQDHHG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g37898.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037135e-89AP003713.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0528E12.
GenBankAP0149625e-89AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126145e-89CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227603.10.0NAC domain-containing protein 75
SwissprotQ9M0F81e-127NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A0Q3H5480.0A0A0Q3H548_BRADI; Uncharacterized protein
STRINGORUFI06G19520.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.13e-92NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]