PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g36236.1.p
Common NameBRADI_1g36236, LOC100832625
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 329aa    MW: 36087.2 Da    PI: 6.1329
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g36236.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.97.3e-3147101155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       ++rlrWt eLH rF++a++qLGG+++AtPk il++m+v+gLt+ hvkSHLQkYRl
  Bradi1g36236.1.p  47 RQRLRWTDELHGRFLDALTQLGGPDRATPKGILRTMGVQGLTICHVKSHLQKYRL 101
                       58****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.82244104IPR017930Myb domain
SuperFamilySSF466891.09E-1746102IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-2946102IPR009057Homeodomain-like
TIGRFAMsTIGR015574.6E-2548102IPR006447Myb domain, plants
PfamPF002491.0E-549100IPR001005SANT/Myb domain
PfamPF143796.5E-21133179IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MYEPKPLSST GSAHNNPIPH NQQIVPTANN AASNIGGNSS NINFATRQRL RWTDELHGRF  60
LDALTQLGGP DRATPKGILR TMGVQGLTIC HVKSHLQKYR LSKYIPDPTA DGAKSDKKEL  120
GNLLAGIESS PGMELSEALK LQMEVQKRLR DQLEVQRQLQ LRIEAQGKYL QKIMEEQQRL  180
TGVLCESGTL NALVPVQELR QDFNKTDPLT PVPTSEPLIR DKASTVSDDH EGTDGLLKDL  240
SSHDECHSSG REPLTPDSSC GAASPLDIPR DRLDHQNSES VLHHNILESR SGSDFQQASS  300
VFPSSTRRSD SPAALYVSED DFKNSPDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-2047104259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-2047104259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-2047104158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-2047104158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-2047104158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-2047104158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-2047104259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-2047104259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-2047104259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-2047104259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-2047104259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-2047104259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g36236.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563637.10.0myb family transcription factor PHL7 isoform X2
RefseqXP_014754863.10.0myb family transcription factor PHL7 isoform X2
RefseqXP_024312887.10.0myb family transcription factor PHL7 isoform X1
RefseqXP_024312888.10.0myb family transcription factor PHL7 isoform X2
SwissprotQ9SJW05e-87PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A0Q3L3I90.0A0A0Q3L3I9_BRADI; Uncharacterized protein
TrEMBLI1GXE00.0I1GXE0_BRADI; Uncharacterized protein
STRINGBRADI1G36236.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-87G2-like family protein