PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g33980.2.p
Common NameBRADI_1g33980
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 360aa    MW: 39011.3 Da    PI: 4.6552
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g33980.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.62.7e-16264300135
              GATA   1 CsnCg..ttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C++Cg  +++Tp++Rrgpdg++tLCnaCGl+++ kg+
  Bradi1g33980.2.p 264 CHHCGinAKNTPMMRRGPDGPRTLCNACGLMWANKGM 300
                       ****833566***********************9996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.234128163IPR010399Tify domain
SMARTSM009796.2E-11128163IPR010399Tify domain
PfamPF062004.1E-13130162IPR010399Tify domain
PfamPF062031.2E-15189231IPR010402CCT domain
PROSITE profilePS5101713.334189231IPR010402CCT domain
SMARTSM004013.0E-13258311IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.117258315IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.18E-12262321No hitNo description
Gene3DG3DSA:3.30.50.101.6E-15263304IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.29E-14263306No hitNo description
PfamPF003207.8E-14264299IPR000679Zinc finger, GATA-type
PROSITE patternPS003440264291IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MAQHDGKPYQ PRRGPERPPS APQPADDAAL GASAVDHLAA AAAEAEAMNR FDEEHEQQEM  60
EEEDEEEEEV EEEEMEEDDD DEAEGDGQLD GGGNGESVPM DAAAAAAAAA AAGVPLDPHG  120
AMVAANAANA STNQLTLSFQ GEVYVFDSVS PDKVQAVLLL LGGRELNPGL GAGSSSSTPY  180
SKRLNFPHRV ASLMRFREKR KERNFDKKIR YTVRKEVALR MQRNRGQFTS SKPKPDEATS  240
ELATPDGSPN WGSVEGRPPS AAECHHCGIN AKNTPMMRRG PDGPRTLCNA CGLMWANKGM  300
LRDLAKSTPT PLQVMVSAPN DSHLPLNKKI PQQWSPMVMS LQHEWGAAHF NWDRNIILE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g33980.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753285.10.0GATA transcription factor 20
SwissprotQ5Z4U51e-139GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A0Q3NIS40.0A0A0Q3NIS4_BRADI; Uncharacterized protein
STRINGBRADI1G33980.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.29e-76ZIM-LIKE 2