PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g32660.1.p
Common NameBRADI_1g32660, LOC100840500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 304aa    MW: 33758.3 Da    PI: 8.7961
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g32660.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.81.3e-50111431128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                       lppGfrFhP+d+elv +yL++k+ g        +       ++ +vd++kvePwdLp+ +  + kewyf+s rd+kyatg+r+nrat+sgyWk
  Bradi1g32660.1.p  11 LPPGFRFHPRDDELVLDYLARKLVGGGgaaaptI---YgcpTMVDVDLNKVEPWDLPEIACIGGKEWYFYSLRDRKYATGQRTNRATESGYWK 100
                       79********************999886665432...1443699*************7666789***************************** PP

               NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       atgkd+++ + kg lvg++ktLvfy+grapkg+kt+Wvmhe+r 
  Bradi1g32660.1.p 101 ATGKDRPISR-KGLLVGMRKTLVFYQGRAPKGKKTEWVMHEFRK 143
                       ********99.999****************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-603166IPR003441NAC domain
PROSITE profilePS5100555.06611166IPR003441NAC domain
PfamPF023652.5E-2512142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MNSLSMVEAR LPPGFRFHPR DDELVLDYLA RKLVGGGGAA APTIYGCPTM VDVDLNKVEP  60
WDLPEIACIG GKEWYFYSLR DRKYATGQRT NRATESGYWK ATGKDRPISR KGLLVGMRKT  120
LVFYQGRAPK GKKTEWVMHE FRKEGQGDPM KLPFKEDWVL CRVFYKSRAT IAKPPTGNNY  180
NIGSAAATSL PPLIDNYIAF DHSGMSVQNL EGYEQVPCFS NNPSHPLSST SMSMNIPVTA  240
GAPTADQEQQ HVGKAIKDVL SQFTRFDQGN VKREAPPQGG LFAQDGFEYL AESGFSQMWN  300
SLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-49716711169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g32660.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0275720.0HM027572.1 Triticum aestivum NAC transcription factor 7 (NAC7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563412.10.0NAC domain-containing protein 21/22
SwissprotQ84TE67e-87NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLI1GW570.0I1GW57_BRADI; Uncharacterized protein
STRINGBRADI1G32660.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.23e-89NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]