PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g31837.1.p
Common NameBRADI_1g31837, LOC100834368
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 343aa    MW: 36951 Da    PI: 7.251
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g31837.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.31.7e-334498155
           G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                      kprlrWt eLH+rFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl
  Bradi1g31837.1.p 44 KPRLRWTVELHDRFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 98
                      79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-324199IPR009057Homeodomain-like
PROSITE profilePS5129412.3341101IPR017930Myb domain
SuperFamilySSF466891.97E-1643100IPR009057Homeodomain-like
TIGRFAMsTIGR015577.8E-244499IPR006447Myb domain, plants
PfamPF002494.7E-84696IPR001005SANT/Myb domain
PfamPF143791.1E-24138184IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MFPAAAVCSK KPGAVVSSSP NDRPCVVQGQ QGGDSGLVLT TDPKPRLRWT VELHDRFVDA  60
VAQLGGPDKA TPKTIMRVMG VKGLTLYHLK SHLQKFRLGK QHKEFGDHSS VKEAMEMQRN  120
AASSSGMMGR SMNDRSAHMN EALRMQVEVQ RRLHEQLEVQ KHLQLRVEAQ GKYMQSILEK  180
AYQTLASGGD CATWPAAGYR SLGGASMDVG SSMSFQDLTL YGSGSSHLDL QQQMEIRPTM  240
APMDSFLAFN ESCIGRRSPA DAGGSCYGRA AGKSPMMMMW AGDDQQAKSC GTDGDDQLLQ  300
MAPASTMMME AGGVDAMDPI MSMSGDSLGS NKGFDRGPEL QA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-1844100157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-1844100157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-1844100157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-1844100157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g31837.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3651420.0AK365142.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2031F05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560412.10.0myb family transcription factor APL
SwissprotQ9SAK56e-85APL_ARATH; Myb family transcription factor APL
TrEMBLI1GVW20.0I1GVW2_BRADI; Uncharacterized protein
STRINGBRADI1G31837.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25043890
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.22e-78G2-like family protein
Publications ? help Back to Top
  1. Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
    Vascular gene expression: a hypothesis.
    Front Plant Sci, 2013. 4: p. 261
    [PMID:23882276]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kondo Y, et al.
    Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
    Plant Cell, 2016. 28(6): p. 1250-62
    [PMID:27194709]
  4. Shibuta M,Abe M
    FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
    Plant Cell Physiol., 2017. 58(11): p. 2017-2025
    [PMID:29036620]