PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g31337.1.p
Common NameBRADI_1g31337, LOC100845569
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 467aa    MW: 50911.6 Da    PI: 6.2276
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g31337.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.31e-14128187155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  Bradi1g31337.1.p 128 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDKAARAYDLAALKYWG 187
                       57*******************666664477446**********99*************98 PP

2AP247.44.7e-15230281155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Bradi1g31337.1.p 230 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 281
                       57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.8E-12128187IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-17128196IPR016177DNA-binding domain
CDDcd000186.81E-20128197No hitNo description
Gene3DG3DSA:3.30.730.103.0E-15129196IPR001471AP2/ERF domain
SMARTSM003803.2E-28129201IPR001471AP2/ERF domain
PROSITE profilePS5103218.927129195IPR001471AP2/ERF domain
PRINTSPR003671.8E-6130141IPR001471AP2/ERF domain
PfamPF008475.8E-10230281IPR001471AP2/ERF domain
CDDcd000182.00E-23230291No hitNo description
SuperFamilySSF541716.15E-18230291IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-18231290IPR001471AP2/ERF domain
PROSITE profilePS5103219.045231289IPR001471AP2/ERF domain
SMARTSM003801.5E-33231295IPR001471AP2/ERF domain
PRINTSPR003671.8E-6271291IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MDMDMSSTTH PHHWLSFSLS NNYHHGLLEA LSSSSSAHQL GDQEGTVDET PKMEDFLGGV  60
GSGAAGTTAV DQIGCGELGS IAAGFLHQYS APGMPENHGA VTVAAATTDL VESDQARRPA  120
ETFGQRTSIY RGVTRHRWTG RYEAHLWDNS CRREGQSRKG RQVYLGGYDK EDKAARAYDL  180
AALKYWGPTT TTNFPVTNYE TELEEMQSMT RQEFIASLRR KSSGFSRGAS IYRGVTRHHQ  240
HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GLNAVTNFDM SRYDVESILS  300
SDLPVGGGAA TRASKFQADP SLPPQNAGVV SPDMLPPLEK DYWSQLALHY QQQQQQQHQQ  360
QQQQHQQQFH ASAFQTYGSG VNVDFTMGTS SHSSSNGGAM WGATGQQDDG NRQSNSYSSD  420
IPYAAAAAMV SGSAAVYEGS TGNNGTWVTS NPSTAPQFYN YLFGME*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g31337.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1019590.0AK101959.1 Oryza sativa Japonica Group cDNA clone:J033075O07, full insert sequence.
GenBankHQ8588430.0HQ858843.1 Oryza sativa Japonica Group isolate UT1531 AP2-EREBP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563348.30.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-130AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLI1GVQ30.0I1GVQ3_BRADI; Uncharacterized protein
STRINGBRADI1G31337.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-125AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]