PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g29857.1.p
Common NameBRADI_1g29857, LOC100842110
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 305aa    MW: 34004.4 Da    PI: 7.8817
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g29857.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1371.2e-4261463128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.........kvkaeekewyfFskrdkkya..tgk....rknratks 80 
                       pGfrFhPt+eel+ +yLk+ ++g+kl++ ++i++v++y+++PwdLp+         + + +++ewyfF++rd+  +  + +    r++r+t++
  Bradi1g29857.1.p   6 PGFRFHPTEEELLEFYLKQAAHGRKLKF-DIIPTVHLYRHDPWDLPAlagdiihhgSSSCNSREWYFFVPRDSGRKlnQ-QqaagRPSRTTER 96 
                       9**************************9.99***************66788876653333778*******997655331.1344599****** PP

               NAM  81 gyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       g+Wkatg+d++v +    ++l+glkktLv+y+grap+g+ktdWvm+eyrl
  Bradi1g29857.1.p  97 GFWKATGSDRAVRCGadPKRLIGLKKTLVYYQGRAPRGSKTDWVMNEYRL 146
                       *************97666778***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100548.8184177IPR003441NAC domain
SuperFamilySSF1019411.96E-465177IPR003441NAC domain
PfamPF023656.9E-246146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MELELPGFRF HPTEEELLEF YLKQAAHGRK LKFDIIPTVH LYRHDPWDLP ALAGDIIHHG  60
SSSCNSREWY FFVPRDSGRK LNQQQAAGRP SRTTERGFWK ATGSDRAVRC GADPKRLIGL  120
KKTLVYYQGR APRGSKTDWV MNEYRLPEDA MAGGGGNNKV QLLQDRQELV LCKVYRKAVS  180
LKELEQRVAM EELARSGHGG SSSAASSHCT GSPDAAGSMS SDVVQYEAAH HYDGVKIEEA  240
AAAAAAVAKP AAMRLPELET TRMEWLSQPQ QQDPFQLTSS QLRSPWMMES FCLSPCYQSS  300
LLNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-39217712168Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9676333e-49EU967633.1 Zea mays clone 304978 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752297.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
TrEMBLI1GV810.0I1GV81_BRADI; Uncharacterized protein
STRINGBRADI1G29857.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
MonocotsOGMP177038105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.16e-69NAC domain containing protein 36