PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g29826.1.p
Common NameBRADI_1g29826
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 171aa    MW: 18205.6 Da    PI: 8.8838
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g29826.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2201.9e-065779223
                      EETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                      +C++Cg+  ++ s L+ H+ + H
  Bradi1g29826.1.p 57 ECGICGRALRTASALRAHMLRcH 79
                      7*******************955 PP

2zf-C2H212.40.0004993115123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ Cg++F ++  L  H ++H
  Bradi1g29826.1.p  93 FVCGRCGRRFLTWWALGGHRSSH 115
                       89*************99999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.2635684IPR007087Zinc finger, C2H2
SMARTSM003550.0525679IPR015880Zinc finger, C2H2-like
PfamPF139120.0085779IPR007087Zinc finger, C2H2
SuperFamilySSF576674.28E-857115No hitNo description
PROSITE patternPS0002805879IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.5E-491119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.6E-493115IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.67993120IPR007087Zinc finger, C2H2
SMARTSM003552.993115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MAASSFFLLG RRLAVSSFVS GAGGGGGDEP PRYNPWRLKS AHELDDGGSL ARPSSLECGI  60
CGRALRTASA LRAHMLRCHA DVDPAAPPPV RPFVCGRCGR RFLTWWALGG HRSSHNGRKG  120
CSRLSKQQHA QAMAARAPKP AVVRDFDLNE PPAPETEEEE NEDPVAPAAK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g29826.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0Q3H0Y51e-119A0A0Q3H0Y5_BRADI; Uncharacterized protein
STRINGLPERR06G23490.17e-20(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130102729
Representative plantOGRP1137324