PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g22920.1.p
Common NameBRADI_1g22920, LOC100829268
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LBD
Protein Properties Length: 238aa    MW: 24322.7 Da    PI: 7.9889
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g22920.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260989.3e-3112113197
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C++ Cvl+p++     +++q +++ +v+k+FG++ +l++l+a+pe +r+++++sl+yeA  r+ +Pv+Gavg+++++++ql+
  Bradi1g22920.1.p  12 SCNGCRVLRKGCNEACVLRPCLhwieaAESQGHATVFVAKFFGRAGLLSFLTAVPEPQRPAVFQSLLYEAAGRTINPVSGAVGLLWSGSWQLC 104
                       6*********************9999777889************************************************************* PP

            DUF260  89 qlkaelall 97 
                       +++++++l+
  Bradi1g22920.1.p 105 EAAVQTVLR 113
                       **9998776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.79611117IPR004883Lateral organ boundaries, LOB
PfamPF031957.3E-2612111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MRGIEWAAAG MSCNGCRVLR KGCNEACVLR PCLHWIEAAE SQGHATVFVA KFFGRAGLLS  60
FLTAVPEPQR PAVFQSLLYE AAGRTINPVS GAVGLLWSGS WQLCEAAVQT VLRGGAIGPL  120
PDLAGGVPEG GVGGSDLFVS SARRATAVGC STFSTAKRVN TTTTRRPGMP LQAAPAHQQL  180
QDPSCDLGLW LSGPGSPSVA AAGKRAGTPS MSSDDDSVTT SGGAGGGREP ELLNLFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g22920.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562786.11e-170LOB domain-containing protein 37
SwissprotQ9SZE87e-67LBD39_ARATH; LOB domain-containing protein 39
TrEMBLI1GSU51e-169I1GSU5_BRADI; Uncharacterized protein
STRINGBRADI1G22920.11e-170(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40843675
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.16e-65LOB domain-containing protein 39