PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g14780.1.p
Common NameBRADI_1g14780, LOC100832110
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LBD
Protein Properties Length: 237aa    MW: 24491.6 Da    PI: 7.8897
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g14780.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260933.5e-292104198
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C++ Cvl+p +     ++ q++++ +v+k+FG++ ++  l+a+p ++r+++++sl+yeA+ r+ +Pv+G +g++++++++l+
  Bradi1g14780.1.p   2 SCNGCRVLRKGCSDACVLRPSIewidgAQPQANATVFVAKFFGRAGLVASLAAVPLHHRPALFRSLLYEACGRTINPVSGGIGLMWTGNWDLC 94 
                       6*********************9999888899************************************************************* PP

            DUF260  89 qlkaelallk 98 
                       q++a+++l++
  Bradi1g14780.1.p  95 QAAADAVLRG 104
                       ****998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.5781107IPR004883Lateral organ boundaries, LOB
PfamPF031953.8E-232100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLAAVPLHHR  60
PALFRSLLYE ACGRTINPVS GGIGLMWTGN WDLCQAAADA VLRGDSLSAL SAVPAAFTDR  120
DMAGLYGCAN NNNNNTGSSS SLLHHASSSP ENSSSSKPSR KRIKPSFGGA QQMKPPRALM  180
QACELDLCLT PVSPMGGGRR QQGAGGGASD EYSTTTCDEA SGDAEAGAPA LLNLFN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g14780.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2880021e-165AK288002.1 Oryza sativa Japonica Group cDNA, clone: J075110B01, full insert sequence.
GenBankAK3666861e-165AK366686.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2045L18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562289.11e-173LOB domain-containing protein 37
TrEMBLI1GQC01e-172I1GQC0_BRADI; Uncharacterized protein
STRINGBRADI1G14780.11e-173(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84503041
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.12e-54LOB domain-containing protein 37