PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g13980.2.p
Common NameBRADI_1g13980
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 457aa    MW: 48804.7 Da    PI: 7.3331
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g13980.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.77.4e-17281327455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  Bradi1g13980.2.p 281 VHNLSERRRRDRINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKTLQ 327
                       6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-21275344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.266277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.42E-17280331No hitNo description
Gene3DG3DSA:4.10.280.105.2E-22281335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-14281327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-18283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MGDASRPLGF VLDRLIDQRL VDDDLMELLW CNGHVVMQSQ THRKLPPRPE KAAAAAAVMQ  60
EDEAGLWFPF SHADSLDKDI FSDLFCEAVP QAVGIKPDCY GDGNGSKSSD APSELMPPPK  120
STMADGGELS DLVQARSTGK AAAAAMEQEG ASASSFCGSS NQVQVQHAGR VQSAGTAAYG  180
SSARLQSAVG SGINANGRGR EATVASSSGR SNGCFTNTTT TSTEPTSASL RSSSKRKRLD  240
SRTEDYSESP SEDAESESLA LIERKPPLKL PTARRSRAAE VHNLSERRRR DRINEKMKAL  300
QELIPHCNKT DKASMLDEAI EYLKTLQMQV QMMWMGSGMA PPAVMFPGMH QYLPRRMPSF  360
MAPPPAAAAA AQSLPDHYAH FLGVNHHLQP PSHHHQHYAA QGMGYYPLGA KAVQQSPALP  420
IHHVHSTANG ATPAPAAAAA ATNSNTPGNG MHPNRI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1285290ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKX0854221e-116KX085422.1 Triticum aestivum stress-responsive bHLH transcription factor (bHLH39) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559649.10.0PREDICTED: transcription factor PIF1-like
RefseqXP_014752368.10.0PREDICTED: transcription factor PIF1-like
RefseqXP_014752369.10.0PREDICTED: transcription factor PIF1-like
RefseqXP_014752370.10.0PREDICTED: transcription factor PIF1-like
RefseqXP_014752371.10.0PREDICTED: transcription factor PIF1-like
RefseqXP_014752372.10.0PREDICTED: transcription factor PIF1-like
TrEMBLA0A0Q3KSJ60.0A0A0Q3KSJ6_BRADI; Uncharacterized protein
STRINGBRADI1G13980.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.27e-35phytochrome interacting factor 3