PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g12330.5.p
Common NameBRADI_1g12330
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 297aa    MW: 31765.7 Da    PI: 4.704
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g12330.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.37.5e-17198234135
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C+nCgt++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Bradi1g12330.5.p 198 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANKGT 234
                       **********************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.5045792IPR010399Tify domain
SMARTSM009798.7E-95792IPR010399Tify domain
PfamPF062001.1E-125991IPR010399Tify domain
PROSITE profilePS5101713.255126168IPR010402CCT domain
PfamPF062032.3E-14126166IPR010402CCT domain
SMARTSM004017.4E-9192245IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.24E-10196241No hitNo description
CDDcd002021.37E-15197236No hitNo description
Gene3DG3DSA:3.30.50.105.8E-14197236IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440198225IPR000679Zinc finger, GATA-type
PfamPF003202.0E-14198234IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MSDAAAAQEA DADMRDVDAA APAPSEDDAG EEEEGDKEGE EELALAEEPP VSLVPALPAN  60
PNQLTLLFQG EVYVFESVTP DKVQAVLLLL GTGEIPPDLA GMVLRSQHEN RGYDDLLQRT  120
DIPAKRVASL IRFREKRKGR NFDKKIRYAV RKEVALRMQR RKGQFAGRAN LEGESPSPGC  180
DPASQGSGQD FLSRESKCQN CGTSEKMTPA MRRGPAGPRT LCNACGLMWA NKGTLRSCLK  240
AKGEAPMVAI EQIGIDIKAL TSQNNDNVAP GNVEAIGDST HANVAVIEGV PKAQSE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g12330.5.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3547461e-144AK354746.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1010K24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559571.10.0GATA transcription factor 18 isoform X2
SwissprotQ10F251e-134GAT18_ORYSJ; GATA transcription factor 18
TrEMBLI1GPJ00.0I1GPJ0_BRADI; Uncharacterized protein
STRINGBRADI1G12330.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-68ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]