PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g09550.2.p
Common NameBRADI_1g09550, LOC100838337
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 210aa    MW: 23346.8 Da    PI: 10.1996
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g09550.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.72.2e-1589125135
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C+nCg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  Bradi1g09550.2.p  89 CRNCGISSrlTPAMRRGPAGPRSLCNACGLMWANKGT 125
                       **********************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062037.0E-161858IPR010402CCT domain
PROSITE profilePS5101713.3541860IPR010402CCT domain
SMARTSM004014.8E-983137IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.33E-1087134No hitNo description
Gene3DG3DSA:3.30.50.101.6E-1387127IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.85E-1289139No hitNo description
PfamPF003203.1E-1389125IPR000679Zinc finger, GATA-type
PROSITE patternPS00344089116IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MAVPTAYGEK STTVAAKRVA SLMRFREKRK ERCFDKKIRY GVRKEVAQKM KRRKGQFAGR  60
ADLGDGACSS AVCSSQANGE DDHFLETHCR NCGISSRLTP AMRRGPAGPR SLCNACGLMW  120
ANKGTLRSPL NAPKMAVQHP PNLSKMDVLN MDYDKTILCA ENDQTTIKMD SGMSPEQVQR  180
LEPPPTDRRR QHDSFPTKDN FMTVDKHLG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g09550.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559456.11e-157GATA transcription factor 19 isoform X1
SwissprotQ0DNU11e-102GAT19_ORYSJ; GATA transcription factor 19
TrEMBLA0A0Q3JMT21e-156A0A0Q3JMT2_BRADI; Uncharacterized protein
TrEMBLI1GNL71e-155I1GNL7_BRADI; Uncharacterized protein
STRINGBRADI1G09550.11e-156(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.22e-41ZIM-LIKE 2