PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g09550.1.p
Common NameBRADI_1g09550, LOC100838337
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 285aa    MW: 30953.3 Da    PI: 8.4864
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g09550.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA473.4e-15164200135
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C+nCg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  Bradi1g09550.1.p 164 CRNCGISSrlTPAMRRGPAGPRSLCNACGLMWANKGT 200
                       **********************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009799.6E-103166IPR010399Tify domain
PROSITE profilePS5132015.1513166IPR010399Tify domain
PfamPF062001.6E-123465IPR010399Tify domain
PfamPF062031.1E-1593133IPR010402CCT domain
PROSITE profilePS5101713.35493135IPR010402CCT domain
SMARTSM004014.8E-9158212IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.6E-13162202IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577164.09E-10162209No hitNo description
PROSITE patternPS003440164191IPR000679Zinc finger, GATA-type
PfamPF003204.9E-13164200IPR000679Zinc finger, GATA-type
CDDcd002025.69E-13164214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MASETAADGH DHPPAVAPGN DENAAAAEAL LSTASEQLTL VYQGEVYVFD PVPPQKVQAV  60
LLVLGGCEVP PGLVSMAVPT AYGEKSTTVA AKRVASLMRF REKRKERCFD KKIRYGVRKE  120
VAQKMKRRKG QFAGRADLGD GACSSAVCSS QANGEDDHFL ETHCRNCGIS SRLTPAMRRG  180
PAGPRSLCNA CGLMWANKGT LRSPLNAPKM AVQHPPNLSK MDVLNMDYDK TILCAENDQT  240
TIKMDSGMSP EQVQRLEPPP TDRRRQHDSF PTKDNFMTVD KHLG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g09550.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3767000.0AK376700.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3132B09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559456.10.0GATA transcription factor 19 isoform X1
SwissprotQ0DNU11e-131GAT19_ORYSJ; GATA transcription factor 19
TrEMBLI1GNL70.0I1GNL7_BRADI; Uncharacterized protein
STRINGBRADI1G09550.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.23e-58ZIM-LIKE 2