PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g03780.1.p
Common NameBRADI_1g03780, LOC100837855
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 149aa    MW: 15912.3 Da    PI: 11.1439
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g03780.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00079107129123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ Cg  F     L  H+r+H
  Bradi1g03780.1.p 107 HECHVCGAGFEMGQALGGHMRRH 129
                       79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.24E-84770No hitNo description
PfamPF139126.1E-104872IPR007087Zinc finger, C2H2
SMARTSM003550.964870IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.934875IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
SuperFamilySSF576675.24E-8102129No hitNo description
PfamPF139121.4E-11107132IPR007087Zinc finger, C2H2
SMARTSM003550.37107129IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.118107134IPR007087Zinc finger, C2H2
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MKHMTRDFQS EVAAAVPLSL SLSLGAMAAE RKIKKLRHRT AGGAGESFVC KTCSRAFASF  60
QALGGHRTSH LRGRHGLALS LSGSPPPPPP RKSTEQKNSK PSQQQQHECH VCGAGFEMGQ  120
ALGGHMRRHR EEAAAQAQAP PVLLQLFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g03780.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563654.11e-103zinc finger protein ZAT8
SwissprotQ9LX858e-19ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLI1GLK31e-102I1GLK3_BRADI; Uncharacterized protein
STRINGBRADI1G03780.11e-102(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Representative plantOGRP1190434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.11e-20C2H2 family protein