PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g03146.1.p
Common NameBRADI_1g03146
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 217aa    MW: 23373.3 Da    PI: 8.457
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g03146.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.92.1e-19181722127
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpk....................kvkaeekewyfFskrdkkyatg 71 
                        pG+ F+Pt+ el + yL++k++g +   +e++ +++++d+y+ eP++L +                    ++   +  wyfFs+++ + +++
  Bradi1g03146.1.p  18 LPGCSFSPTEIELTDVYLRRKIAGGHdfpVEAAGFFHDADVYSDEPEKLVQpflprqapaqgtsrrrpgtsSAPRATPAWYFFSPARYAGKKK 110
                       69*********************999876666667**************655689999999988887764322224459*****998766655 PP

               NAM  72 k..rknratk...sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyr 127
                       +  r++r+++   s  W++    ++v   ++++ g+ + L +   ++ + k+e++ W+m ey 
  Bradi1g03146.1.p 111 SsgRRSRTIDgdgSKNWHSEKMAQPVEG-GSAVGGCVQKLSYMvkNEASGKSERAGWIMAEYG 172
                       4114444333433445**********99.9999**********433344556799*******6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-2313188IPR003441NAC domain
PROSITE profilePS5100523.84617190IPR003441NAC domain
PfamPF023652.4E-1419172IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
IKIGRSGARE STTTTAVLPG CSFSPTEIEL TDVYLRRKIA GGHDFPVEAA GFFHDADVYS  60
DEPEKLVQPF LPRQAPAQGT SRRRPGTSSA PRATPAWYFF SPARYAGKKK SSGRRSRTID  120
GDGSKNWHSE KMAQPVEGGS AVGGCVQKLS YMVKNEASGK SERAGWIMAE YGISPEHGGG  180
HLVLCKILMA ADEVIYGFSS VDPGFSPEML ERLLSE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g03146.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229406.16e-49NAC domain-containing protein 17
RefseqXP_010229407.15e-49NAC domain-containing protein 53
TrEMBLA0A0Q3N6N91e-158A0A0Q3N6N9_BRADI; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62801545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.11e-12NTM1-like 8