PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g01801.1.p
Common NameBRADI_1g01801, LOC104581931
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 260aa    MW: 28576 Da    PI: 7.5024
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g01801.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM55.52e-1721372128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk............kvkaeekewyfFskrdkkyatgkrknratksg 81 
                       ++G+ F P+d++lvv++L+++++g + +   ++++++d+y++ P dL +            +   +++ wyfFs++++ ++   ++ r+    
  Bradi1g01801.1.p   2 AAGVVFTPSDHDLVVHFLRPRIAGADvFGRGRFFHDADVYSAAPADLVHgrdhapgtnkldSKGMDRSTWYFFSPAQRLQT---KSGRVGG-- 89 
                       68************************5444456**************7457888988865322225569*******99875...5666533.. PP

               NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkge...ktdWvmheyrl 128
                         + +g +k+vl+++g+ vg  + L f  +++  ge   +  W+m ey++
  Bradi1g01801.1.p  90 --RRQGGEKPVLDSDGRRVGYMRKLSFLIKKTMPGEpmtRVGWCMTEYEI 137
                       ..68999********************965555444334899******86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.9621152IPR003441NAC domain
PfamPF023653.7E-123137IPR003441NAC domain
SuperFamilySSF1019418.5E-253151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MAAGVVFTPS DHDLVVHFLR PRIAGADVFG RGRFFHDADV YSAAPADLVH GRDHAPGTNK  60
LDSKGMDRST WYFFSPAQRL QTKSGRVGGR RQGGEKPVLD SDGRRVGYMR KLSFLIKKTM  120
PGEPMTRVGW CMTEYEIDGD EDRLVLCKVY RSRSRSKNTE TASMVAGSKK RKAADDDELY  180
ALGVYAGAAD AANQHKNVCR RQEMPPRIQE IETMGGAEQV RNPSERAEED DGRAGGGRGC  240
DEDDGRFECK LEELLGGGV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g01801.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229408.10.0NAC domain-containing protein 72
TrEMBLA0A0Q3GNX30.0A0A0Q3GNX3_BRADI; Uncharacterized protein
STRINGEMT051474e-29(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43632158
Representative plantOGRP1189925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-12NAC domain containing protein 28