PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00125.13
Common NameAMTR_s00125p00062940
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 423aa    MW: 46246.8 Da    PI: 9.8646
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00125.13genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.59.9e-05189211223
                                              EETTTTEEESSHHHHHHHHHH.T CS
                                  zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                              +C++Cg+ +  ++ L++H  + H
  evm_27.model.AmTr_v1.0_scaffold00125.13 189 TCHKCGEQYAKWEALETHHLSkH 211
                                              7*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280190211IPR007087Zinc finger, C2H2
SuperFamilySSF563991.44E-24213421No hitNo description
Gene3DG3DSA:3.90.228.101.2E-9221398IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MPTVWFTLKR SLHCKSEPSE VHDPKSRRHL STILTRKTGR SGCSRSISNL KDVIHGSKRH  60
IEKPPSCSPR SIGSSEFLNP ITHEVILSNS KCELKISGFN GHTDGDSTFV GTLRPGTPGP  120
GGHHAVNCSP SFRGGATTPP RKSPGFFSDR NGSKYGGSSI STAIFGGTGL STSGRRSSHE  180
ADGHFSSVTC HKCGEQYAKW EALETHHLSK HAVTELVEGD SSRKIVEIIC RTSWLKSENN  240
CGRIERVLKV HNMQKTLARF EEYREMVKIK ASKLPKKHPR CLADGNELLR FYGSTITCSL  300
GMNGFSNLCN SEKCSVCRII RHGFSTKKEG KGGIGVFTTS TSGRAYESIE LFEENPSLRK  360
ALLVCRVIAG RVHRPLDNMQ ALSGQSGFDS VAGKVGLYSN IEELYLLNPR ALLPCFVVIC  420
KP*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020517690.10.0uncharacterized protein LOC18425453
RefseqXP_020517691.10.0uncharacterized protein LOC18425453
TrEMBLW1NR640.0W1NR64_AMBTC; Uncharacterized protein
STRINGERM974800.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6611439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-171C2H2 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]