PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00099.104
Common NameAMTR_s00099p00122430
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 190aa    MW: 21178.8 Da    PI: 4.7264
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00099.104genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.52.6e-163381355
                                       AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                              ++GVr ++ +gr+v+eIr+p++   ++r++lg+f ++e+Aa+a++ a+  l+g
  evm_27.model.AmTr_v1.0_scaffold00099.104 33 FRGVRKRS-WGRYVSEIREPKK---KTRIWLGSFLSPEMAARAYDSAAFFLKG 81
                                              8****888.**********854...6***********************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.1933289IPR001471AP2/ERF domain
SMARTSM003801.1E-303295IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-283290IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-183290IPR016177DNA-binding domain
PfamPF008479.2E-103381IPR001471AP2/ERF domain
PRINTSPR003672.9E-103344IPR001471AP2/ERF domain
CDDcd000182.86E-263391No hitNo description
PRINTSPR003672.9E-107191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MANSPVPESL AGTDFPVKRT AGNQLPGDQK TTFRGVRKRS WGRYVSEIRE PKKKTRIWLG  60
SFLSPEMAAR AYDSAAFFLK GNKSALNFPE LAEFLPRPAS NSRRDIQAAA LKAANEIFVA  120
ESFGEIEDER VEEIDLGFSR NFGDVLSLEF DGELMDFFER VADAPLMSPL RIEAEGQGNF  180
GTFTTEFYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-162290473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020519047.11e-135ethylene-responsive transcription factor ERF039
SwissprotQ8LBQ73e-33ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLW1NYJ01e-133W1NYJ0_AMBTC; Uncharacterized protein
STRINGERM997491e-134(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.17e-36ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]